CK936663

Overview
NameCK936663
Unique NameCK936663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936663_ssr56 microsatellite CK936663_ssr56:56..71. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936663_ssr72 microsatellite CK936663_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.865e-72
Identity = 134/182 (73.63%), Postives = 150/182 (82.42%), Query Frame = 3
Query:  225 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHS-----------FVMATSNGGFLHTD-PATPPN-LLPPWLS 731
            MKERQRW  EEDALLRAYV+Q+GP+EW  VS+RMN PLNRDAKSCLERWKNYLKPGIKKGSLT+EEQ LVI LQ KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE+K+S + V+PIDE KYD+ILE+FAEKLV   S            VMA SNGGFLH++    PPN ++PPWL+
Sbjct:    1 MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEPIDESKYDRILESFAEKLVKERSNVVPAAAAAATVVMANSNGGFLHSEQQVQPPNPVIPPWLA 182          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.134e-61
Identity = 119/173 (68.79%), Postives = 133/173 (76.88%), Query Frame = 3
Query:  225 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIR---IVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSN 734
            MKERQRWR EEDA+LRAYV+QYGP+EW  VSQRMN  L+RDAKSCLERWKNYL+PGIKKGSLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +DS R      P +  +Y+ +LE FAEKLV       A +    L   P     +LPPWLS+
Sbjct:    1 MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPEPSPDERGRYEWLLENFAEKLVGERPQQAAAAPSPLLMAAP-----VLPPWLSS 168          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.934e-61
Identity = 120/179 (67.04%), Postives = 137/179 (76.54%), Query Frame = 3
Query:  225 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE--QKDSIRIVDPIDEH-------KYDQILETFAEKLVNNHSFVMATSNGGFLHTDPATPPNLLPPWLSN 734
            M+ERQRWR EEDA+L AYV+QYGP+EWS VSQRMN PL+RDAKSCLERWKNYL+PGIKKGSLTD+EQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE   +D  R+  P+D         +YD +LE FA+KLVN+H   M            A P  +LPPW+S+
Sbjct:    6 MRERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDRRRLPPPLDGDERGCAGGRYDWLLEDFADKLVNDHHRRMM-----------AAP--ILPPWMSS 171          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  213 LLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 560
            L+ E   +  W  +ED LL  +V  +G + W FV++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:    3 LVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  243 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 560
            W  +ED LL  +V  +G + W F+++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:   12 WTEQEDILLVNFVHLFGDRRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  231 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDS 566
            +R  W+ EED +L++YV+ +G   W+ +S+R    L R  KSC  RWKNYL+P IK+GS++ +EQ+L+I +    GN+W  IA  +PGRT   +  +W     K+   ++ +
Sbjct:   13 KRGLWKPEEDMILKSYVETHGEGNWADISRRSG--LKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQN 122          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  216 LLEMKE---RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 524
            LL MK+   + +W+ EED +L+ YV QYG + W+ V +R   P N    SC  RW N+LKP +KKG  TDEE+  V+ L A  GNKW ++A E PGRT   +  +W
Sbjct:    9 LLAMKKTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHN--PASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFW 112          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  207 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 545
            CC  + +K+   W  EED +L +Y++++GP  W  +    NT L R +KSC  RW NYL+PGIK+G  T+ E+ ++IHLQA  GN+W  IA+ +P RT   +  +W    +K+
Sbjct:    6 CCDKIGVKKGP-WTPEEDIILVSYIQEHGPGNWRAIPS--NTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  243 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 551
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CK936663 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  243 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 551
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
The following BLAST results are available for this feature:
BLAST of CK936663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
AS1_ARATH1.865e-7273.63Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_MAIZE1.134e-6168.79Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
RS2_ORYSJ1.934e-6167.04Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
MYB59_ARATH1.957e-2141.38Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH4.360e-2142.45Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB82_ARATH3.691e-2038.39Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MY104_ARATH3.691e-2045.28Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB06_ANTMA4.820e-2040.71Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
GAM1_ORYSJ8.222e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI8.222e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004519_F12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936663 ID=CK936663; Name=CK936663; organism=Citrus sinensis; type=EST; length=734bp
GGGGGCCTACTCTGGGTTTTGTTTGTGCTCTACTTTTCCTGCTCTCAGCA
GTTTCGTTTGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTT
CATTGAAGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTT
TTTTAACACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAAT
GGACAGTGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGC
TGAAGAGGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGG
AGTGGAGTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCA
AAATCTTGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAA
AGGATCCCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAA
AACACGGCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACT
GCTAAGAGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAG
AGAACAAAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGT
ACGATCAGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCA
TTTGTCATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTAC
CCCTCCAAATCTGCTTCCCCCATGGCTTTCAAAT
back to top