CK936659

Overview
NameCK936659
Unique NameCK936659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1810 contig Csv1_Contig1810:99..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: BR44L_BOVIN (Brain protein 44-like protein OS=Bos taurus GN=BRP44L PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.188e-17
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ V
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKV 73          

HSP 2 Score: 34.2686 bits (77), Expect = 1.188e-17
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQLYHLSRWARSQ 277
            PRN+LL ACHA+NE  QL    R  R +
Sbjct:   75 PRNWLLFACHATNEVAQLIQGGRLIRHE 102          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: BR44L_HUMAN (Brain protein 44-like protein OS=Homo sapiens GN=BRP44L PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.612e-17
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ V
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKV 73          

HSP 2 Score: 33.113 bits (74), Expect = 2.612e-17
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQL 247
            PRN+LL ACHA+NE  QL
Sbjct:   75 PRNWLLFACHATNEVAQL 92          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: YCYB_SCHPO (UPF0041 protein C1235.11 OS=Schizosaccharomyces pombe GN=SPCC1235.11 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.379e-17
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVA 195
            +THFWGP++N+G  +A ++DLKK P +ISG MT A+ +YS +FMR+AWMV+
Sbjct:   34 STHFWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVS 84          

HSP 2 Score: 33.4982 bits (75), Expect = 3.379e-17
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQ 244
            PRNYLLL CHA N TVQ
Sbjct:   85 PRNYLLLGCHAFNTTVQ 101          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: YNFD_CAEEL (UPF0041 protein R07E5.13 OS=Caenorhabditis elegans GN=R07E5.13 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.404e-17
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A L DLKK P+MISG MT+A+ IYS +FMRFAW V
Sbjct:   26 STHFWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHV 75          

HSP 2 Score: 26.9498 bits (58), Expect = 7.404e-17
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQLYHLSRW 265
            PRN LL ACH +N + Q   L R+
Sbjct:   77 PRNLLLFACHFANFSAQGAQLGRF 100          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: BR44L_RAT (Brain protein 44-like protein OS=Rattus norvegicus GN=Brp44l PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.464e-17
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ V
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKV 73          

HSP 2 Score: 31.5722 bits (70), Expect = 7.464e-17
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQL 247
            PRN+LL ACH +NE  QL
Sbjct:   75 PRNWLLFACHVTNEVAQL 92          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: BR44L_MOUSE (Brain protein 44-like protein OS=Mus musculus GN=Brp44l PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.464e-17
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A + D+KK PE+ISG MT A+C YS  FMRFA+ V
Sbjct:   24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKV 73          

HSP 2 Score: 31.5722 bits (70), Expect = 7.464e-17
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQL 247
            PRN+LL ACH +NE  QL
Sbjct:   75 PRNWLLFACHVTNEVAQL 92          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: FMP37_YEAST (UPF0041 protein FMP37 OS=Saccharomyces cerevisiae GN=FMP37 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.800e-15
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMVA 195
            TTHFWGPV+N+G  +A + DLKK P +ISG MT A+  YSG+FM++A  V+
Sbjct:   28 TTHFWGPVSNFGIPIAAIYDLKKDPTLISGPMTFALVTYSGVFMKYALSVS 78          

HSP 2 Score: 33.113 bits (74), Expect = 3.800e-15
Identity = 14/36 (38.89%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQLYHLSRWARSQGYLSEKKK 301
            P+NYLL  CH  NET QL    R+ +   + ++++K
Sbjct:   79 PKNYLLFGCHLINETAQLAQGYRFLKYTYFTTDEEK 114          
BLAST of CK936659 vs. ExPASy Swiss-Prot
Match: BR44M_BOVIN (Brain protein 44-like protein 2 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.739e-14
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   43 TTHFWGPVANWGFVVAGLVDLKKPPEMISGNMTTAMCIYSGLFMRFAWMV 192
            +THFWGPVANWG  +A   D++  P++ISG MTTA+  YS  FMRFA+ V
Sbjct:   26 STHFWGPVANWGLPLAAFRDMRASPDIISGRMTTALIFYSMAFMRFAYRV 75          

HSP 2 Score: 27.7202 bits (60), Expect = 8.739e-14
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  194 PRNYLLLACHASNETVQLYHLSRW 265
            PRN LL+ACH +N   Q     R+
Sbjct:   77 PRNLLLMACHGTNIVAQSMQAGRY 100          
The following BLAST results are available for this feature:
BLAST of CK936659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BR44L_BOVIN1.188e-1764.00Brain protein 44-like protein OS=Bos taurus GN=BRP... [more]
BR44L_HUMAN2.612e-1764.00Brain protein 44-like protein OS=Homo sapiens GN=B... [more]
YCYB_SCHPO3.379e-1756.86UPF0041 protein C1235.11 OS=Schizosaccharomyces po... [more]
YNFD_CAEEL7.404e-1770.00UPF0041 protein R07E5.13 OS=Caenorhabditis elegans... [more]
BR44L_RAT7.464e-1764.00Brain protein 44-like protein OS=Rattus norvegicus... [more]
BR44L_MOUSE7.464e-1764.00Brain protein 44-like protein OS=Mus musculus GN=B... [more]
FMP37_YEAST3.800e-1556.86UPF0041 protein FMP37 OS=Saccharomyces cerevisiae ... [more]
BR44M_BOVIN8.739e-1458.00Brain protein 44-like protein 2 OS=Bos taurus PE=2... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004519_F06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936659 ID=CK936659; Name=CK936659; organism=Citrus sinensis; type=EST; length=484bp
GCTTCGGTGCCAGCATTCTGGNNNAGTCCGGTTGGTCCAAAAACAACTCA
CTTTTGGGGACCTGTTGCCAACTGGGGATTTGTTGTTGCAGGTTTGGTGG
ACCTAAAGAAACCTCCAGAAATGATTTCTGGTAACATGACAACAGCAATG
TGTATCTATTCAGGATTGTTCATGAGGTTTGCGTGGATGGTAGCCACGCA
ATTATTTACTTTTGGCATGCCATGCTTCAAATGAGACTGTACAGCTCTAT
CACCTTTCCCGTTGGGCAAGGTCTCAGGGGTATTTGTCAGAGAAGAAGAA
GGATGAGGCCTCGTCTCAGTAATTCCTTGCTGCTTTCTTTCCTGTCCATT
TTCATTTTATTTTTGCTGTGATTTAAGCGCGAAGTATTAGTAAGGCTTCA
CAAGTCCACCTCCTTGTGATACTTTGTATTTGATTCTATGTCGAGGATAA
CTCAGCAGATCACTATCAATTGAATCTGATCCTG
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