CK936658

Overview
NameCK936658
Unique NameCK936658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936658_ssr51 microsatellite CK936658_ssr51:51..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10573 contig Csv1_Contig10573:1..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.383e-36
Identity = 83/193 (43.01%), Postives = 125/193 (64.77%), Query Frame = 3
Query:   93 KYFLILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKV---VRAQIVKIAHMTSNALALINSYAS 653
            K  L+  A+   L ++SA        A   +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L   +     M +++K  G+K+R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   MS+++TWVSAALTDETTC DGF    ++GK+   VRAQ+V +A +TSNALAL+N++A+
Sbjct:    5 KSTLVFSALLVILAAASA--------APANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.815e-20
Identity = 63/190 (33.16%), Postives = 108/190 (56.84%), Query Frame = 3
Query:  102 LILLAIFSYLNSSSASRHGPSKI----AADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI---VKIAHMTSNALALINS 644
            L+LLA    + +++ +++   KI    +     +K+ CSST YP LC+ ++A       TS K +  ASLN+T  A+  +  AV   ++K  G+  REV A+ DCLE + +++DEL  ++ ++    K  +      D++T +S+A+T++ TC DGF  +  + KV +A +   V + HM SNALA+I +
Sbjct:   29 LLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKN 218          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 50/157 (31.85%), Postives = 90/157 (57.32%), Query Frame = 3
Query:  189 IKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKM-SKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLIKA-SNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI---VKIAHMTSNALALINS 644
            +++SCSST YP LC  ++     +  TS K +  AS+N+T+   +     + K+  K  G+  RE  A+ DCLE + +++DEL +++ ++ L            D++T +S+A+T++ TC DGF  +  + +V +A +   + + HM SNALA+I +
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKN 215          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 3
Query:   42 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI----VKIAHMTSNALALINS 644
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +      D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:    9 TKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 3
Query:   42 SKVRERDMEGSSSNHMLKYFLILLAIFSYL-----------NSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQI----VKIAHMTSNALALINS 644
            +K+ E     + SN   K   + LA+F+ L             +S    G +        +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +      D++T +SAA+T++ TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:    9 TKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.758e-15
Identity = 50/157 (31.85%), Postives = 91/157 (57.96%), Query Frame = 3
Query:  189 IKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTL-AMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAH---MTSNALALI 638
            +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+ A+ ++  AV   +    G+  RE  A+ DCLE + +++DEL  ++ ++ L     + +  + D++T +S+A+T++ TC DGF  +  + KV +  +    H   M SNALA+I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.758e-15
Identity = 52/185 (28.11%), Postives = 90/185 (48.65%), Query Frame = 3
Query:  102 LILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL---AMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIV----KIAHMTSNALAL 635
            ++   IF+ + +  + +  P       + I  +CS + YP LC  +L      +      L H S N TL   + A  TS+ +      P ++S    A   CLE L DSVD L +++  + ++       + SD+ TW+S+A+T+  TC+DGF++    G  V+ Q++     ++ M SN LA+
Sbjct:   46 VVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRS----AYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI 223          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.066e-12
Identity = 52/211 (24.64%), Postives = 101/211 (47.87%), Query Frame = 3
Query:   42 SKVRERDMEGSSSNHMLKYFLILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAM---AKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRAQIVKIAHMTSNALALINSYASLRG 662
            SK + R +  + S+ +L   ++ + +   LN       G +++ A  + +K  C+ T Y   C  +L ++     T P  L   + NVT+     A   S  ++++ K     SR   A+  C E +  ++DEL  S  E+G  +    +  + +++ W+SAA++ E TC +GF+    N G+ ++  +     +T N LA+I+  ++  G
Sbjct:    9 SKRKRRYIVITISSVLLISMVVAVTVGVSLNKHDGDSKGKAEVNASVKAVKDVCAPTDYRKTCEDTLIKNGKNT-TDPMELVKTAFNVTMKQITDAAKKSQTIMELQKD----SRTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAGETMKKALKTAIELTHNGLAIISEMSNFVG 214          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 52/211 (24.64%), Postives = 97/211 (45.97%), Query Frame = 3
Query:   42 SKVRERDMEGSSSNHMLKYFLILLAIFSYLNSSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKST---SAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRAQIVKIAHMTSNALALINSYASLRG 662
            +K ++R +  S S+ +L   ++ + I   +N S  +  G  +I    + IK  C+ T Y   C  +L + A    + P  L   + N T+         S  M+++ K P  K     A+  C E +  ++ EL KS  E+G  +    +  +  ++ W+SA ++ E TC DGF+    N G+ ++  +     +T N LA++   ++  G
Sbjct:   10 AKRKKRYVIISISSVLLISMVVAVTIGVSVNKSDNA--GDEEITTSVKAIKDVCAPTDYKETCEDTLRKDAK-DTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRAKM----ALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVTEMSNYLG 213          
BLAST of CK936658 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 40/157 (25.48%), Postives = 82/157 (52.23%), Query Frame = 3
Query:  183 RFIKTSCSSTTYPTLCYKSLARHAS--LIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKSREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSY 647
            + I+T CSST Y  +C K+L           +P     +++    A+ +    V+ K+         + DA++ C   + D+ +E   S+ ++ + + ++FE  + D+++W+SA ++ + TC DGFE+  +  + V+  +     +TSN+LALI ++
Sbjct:  107 KIIQTLCSSTLYMQICEKTLKNRTDKGFALDNPTTFLKSAIE---AVNEDLDLVLEKVLSLKTENQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGFEEGNLKSE-VKTSVNSSQVLTSNSLALIKTF 259          
The following BLAST results are available for this feature:
BLAST of CK936658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
21KD_DAUCA1.383e-3643.0121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH1.815e-2033.16Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH4.942e-1831.85Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI2.453e-1730.59Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.453e-1730.59Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC1.758e-1531.85Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME61_ARATH1.758e-1528.11Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME21_ARATH1.066e-1224.64Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME28_ARATH9.027e-1224.64Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME13_ARATH2.627e-1125.48Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936658 ID=CK936658; Name=CK936658; organism=Citrus sinensis; type=EST; length=776bp
GGGATCACATAACTCAATCCTCACTTCATTTGCTCATAATTTCAAAGGTC
AGAGAGAGAGACATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTT
TCTCATTTTACTAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCTCTA
GACATGGCCCCTCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCT
TGCAGTTCAACAACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACA
TGCAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCA
ACGTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATG
TCGAAAAGCCCTGGAATGAAGTCTAGAGAGGTGGATGCCATGCAAGATTG
TTTGGAGGAGCTGAGTGATTCAGTTGATGAGCTCAGAAAGTCCATTGGCG
AAATGGGTCTGATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATA
CAGACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGG
ATTTGAGAAGAATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGA
AGATTGCTCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCT
TCTCTTCGCGGTTAGATATTCTCATGATTAGCTCCATTATTGTAAGTGAT
TTATGCAGTATTAATCCTGCCTGTGGAGATCAGATTTATGAAAATGTAAT
CTTTATTGCAAGCAAATAGCAGNNNC
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