CK936651

Overview
NameCK936651
Unique NameCK936651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936651_ssr5 microsatellite CK936651_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13719 contig Csv1_Contig13719:5..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LAH1_YEAST (La protein homolog OS=Saccharomyces cerevisiae GN=LAH1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15
Identity = 51/152 (33.55%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  316 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKL----FTVLVENLPED--------HSVENMQRIFAEAGKIKSICIR 735
            +   NS      T ++  R +KQVE+YFS+ N P D+++     KN +G+VPIS IA+F ++K+  R    ++ ALR S +L VS++G+ VKR  PL +T  R+ ++     T+ V N P +           EN++  F + G+I  + +R
Sbjct:   14 QSRRNSFAVIEFTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKY-RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLR 163          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 47/161 (29.19%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  301 CEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEY 783
            C D  +  +N          L   + KQVE++F D NL  D++M ++I ++++G++ I+V+ +F ++K LT +   I  AL+ S+++ V+  G +++R  PL  T  +D    TV VE LP+  +   ++R+F++ G +  I I        SK  +  E+
Sbjct:   22 CADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFAFVEF 181          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  373 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 732
            I KQV+++F D NL  DK++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G +++R  PL     +D +  TV VE LP++ +   ++R+F + G +  I I
Sbjct:   32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 150          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 42/120 (35.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  373 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 732
            I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G +++R  PL     +D +  TV VE LP++ +   ++R+F + G +  I I
Sbjct:   33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_MACFA (La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  313 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 732
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G +++R  PL     +D    TV VE LP++ +   ++R+F + G +  I I
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_HUMAN (La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  313 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 732
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G +++R  PL     +D    TV VE LP++ +   ++R+F + G +  I I
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 45/139 (32.37%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  316 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 732
            KD E      V    L   I KQV+++F D NL  D+++   I K ++G++ IS++ASF K+K++T +   I  A++ SS++ ++ +G K++R  PL   + +D    TV VE LP++ +   ++R+F + G +  + I
Sbjct:   23 KDREKKKRSRV--KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLG-EKPQDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSI 158          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP6_MOUSE (La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 47/176 (26.70%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  304 EDPIKDHENSSTPAVLTD-------------DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP 741
            E+P + H +++T     D             +L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S  L ++ + +KV+R  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P
Sbjct:   60 EEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKP 235          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LARP6_HUMAN (La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 42/146 (28.77%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  355 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP 741
            ++L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S +L ++ + +KV+R  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P
Sbjct:   90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKP 235          
BLAST of CK936651 vs. ExPASy Swiss-Prot
Match: LA_RAT (Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+  +  F +L RLT +   IV AL +S  +L+ VS++  K++R    P+ EV      D K  +V ++  P D ++++++    + G+I +I +R
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143          
The following BLAST results are available for this feature:
BLAST of CK936651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LAH1_YEAST2.798e-1533.55La protein homolog OS=Saccharomyces cerevisiae GN=... [more]
LARP7_DANRE4.772e-1529.19La-related protein 7 OS=Danio rerio GN=larp7 PE=2 ... [more]
LARP7_MOUSE8.140e-1535.83La-related protein 7 OS=Mus musculus GN=Larp7 PE=1... [more]
LARP7_RAT1.813e-1435.00La-related protein 7 OS=Rattus norvegicus GN=Larp7... [more]
LARP7_MACFA1.813e-1432.86La-related protein 7 OS=Macaca fascicularis GN=LAR... [more]
LARP7_HUMAN1.813e-1432.86La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1... [more]
LARP7_XENTR4.040e-1432.37La-related protein 7 OS=Xenopus tropicalis GN=larp... [more]
LARP6_MOUSE8.999e-1426.70La-related protein 6 OS=Mus musculus GN=Larp6 PE=1... [more]
LARP6_HUMAN8.999e-1428.77La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1... [more]
LA_RAT2.217e-1234.85Lupus La protein homolog OS=Rattus norvegicus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_H01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936651 ID=CK936651; Name=CK936651; organism=Citrus sinensis; type=EST; length=873bp
GGGGGAGAGAGAGAGCAGGGAGAAGAAAGAAGAATGGGCGGGAGGGGTTT
TACCTAAAGGGAATCTCATTTCAGCCTATTCTTGCCTCAATACTCTTTTC
TTCGTCCTCTACCCCTCTCCTTCCGTCCCCAGAAAATGGACGGCTTAGAG
GGTCCCACCTCTACCACCGCCATCCCGGCCGTGGATTCGAACCCACCGTC
TCCTCGGCTCGATCCAGATTTCTCTCCCGTTGGATCACCCGAGCACGACA
TCCCTGATGTTCCAGTTCCACCGTCAGATGACGATCATGATCACGACCAC
TGCGAGGATCCAATTAAAGATCACGAGAACTCCTCTACTCCAGCTGTTCT
CACTGATGATCTGAAACAAAGGATCATTAAGCAGGTGGAATACTATTTTA
GTGATGAGAATTTGCCCACTGATAAGTATATGATGAATTTGATTAGAAAG
AATAAAGAAGGTTTCGTTCCAATATCAGTTATTGCTTCTTTTAGGAAATT
GAAGAGGCTTACCCGAAACCATGCATGGATAGTGGCTGCACTCAGGGAAT
CATCCTTGCTTGTTGTGAGTTCAAATGGGAAGAAGGTAAAGCGCCTTAAT
CCTCTGCCAGTCACTGAAGTCAGGGATCCTAAGTTATTCACTGTTTTGGT
AGAGAATCTACCTGAGGATCACTCGGTAGAGAACATGCAGAGAATATTTG
CAGAAGCTGGAAAAATAAAAAGCATCTGCATCCGTGATCCAAATGTTGTG
GAAGAGTCGAAAAAAAGCAGCAAATATGAGTACTTGGTTAGTAATAAGTT
ACACGCTTTTGTGGAGTACGAGACTGTGGAGGCTGCTGAGAAAGCTGTGG
CTACTTTGAATGATGAACAGGAC
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