CK936639

Overview
NameCK936639
Unique NameCK936639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936639_ssr94 microsatellite CK936639_ssr94:94..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1947 contig Csv1_Contig1947:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: AB13I_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.906e-46
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 1
Query:  307 QRKVVCACVAPPRDLGTDGFPATKFNGSSKSENVNTLFEP-EDDGDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV 690
            +RKV C C+APP++L  D   ATKF+  +KS          E+D DVLIECR+VYKSFGEKHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEEISGLRIGLV
Sbjct:   40 RRKVSCCCIAPPQNLDND---ATKFDSLTKSGGGMCKERGLENDSDVLIECRDVYKSFGEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLV 165          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: POTA_LEGPH (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=potA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  445 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 633
            LIE R +YKS+G   IL  VS  + HGE + ++GPSG GK+T+L++I+G   P +GE++I G+
Sbjct:    5 LIEIRQIYKSYGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQ 67          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: POTA_LEGPA (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Paris) GN=potA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  445 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 633
            LIE R +YKS+G   IL  VS  + HGE + ++GPSG GK+T+L++I+G   P +GE++I G+
Sbjct:    5 LIEIRQIYKSYGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTQGEIFINGQ 67          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: SSUB1_NOCFA (Aliphatic sulfonates import ATP-binding protein ssuB 1 OS=Nocardia farcinica GN=ssuB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  442 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK 636
            + +    + KSFG+K +L GV   IR GE V ++GPSGTGK+T+L+++ GL  PD GEV + GR+
Sbjct:    6 IAVSITGLRKSFGDKTVLDGVDLTIRRGEFVVLLGPSGTGKTTLLRLLTGLEVPDAGEVLVPGRR 70          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: POTA_LEGPL (Spermidine/putrescine import ATP-binding protein potA OS=Legionella pneumophila (strain Lens) GN=potA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  445 LIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 633
            LIE R +YKS+G   IL  VS  + HGE + ++GPSG GK+T+L++I+G   P  GE++I G+
Sbjct:    5 LIEIRQIYKSYGNTPILNNVSLNVNHGEFLTLLGPSGCGKTTLLRLISGFEQPTLGEIFINGQ 67          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: NODI_RHISN (Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain NGR234) GN=nodI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  376 KFNGSSKSENVNTLFEPEDDGDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV*KFE 702
            K +G S ++N  +        DV IE  NV KS+G+K ++  +SF I  GE  G++GP+G GKST+ +++ GL  PD+G + + G     + +   ++  RIG+V +F+
Sbjct:   25 KCHGHSNADNSLS----RSKSDVAIELTNVSKSYGDKVVVDQLSFTITSGECFGLLGPNGAGKSTVSRLVLGLAPPDEGTITVLGEP---VPARARLARSRIGVVPQFD 126          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  442 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLV*KFED 705
            V I+  +V KS+G+K ++ G+SF +  GE  G++GP+G GKSTI ++I G+  P  GE+ + G     + S   ++ +RIG+V +F++
Sbjct:   35 VAIDVASVTKSYGDKPVINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPGTGEITVLG---VPVPSRARLARMRIGVVPQFDN 119          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: Y5533_VIBVU (Putative ABC transporter ATP-binding protein VV2_1533 OS=Vibrio vulnificus GN=VV2_1533 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  439 DVLIECRNVYKSF-GEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR 633
            + L++ RN+  S+ GEK+ L GVSF ++ GE V I+G +G+GKSTI K+I G++ PD G +Y+ G+
Sbjct:  296 ETLLDVRNLTYSYDGEKNALEGVSFNVQRGEFVSILGKNGSGKSTITKLIMGVIEPDDGAIYLNGQ 361          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: RBSA_SILST (Ribose import ATP-binding protein rbsA OS=Silicibacter sp. (strain TM1040) GN=rbsA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  436 GDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRG 630
            GDV+++  N+ KSFG    L+GV F++R GE   I G +G GKST++ II G+L PD GE+ + G
Sbjct:    3 GDVILQISNLTKSFGPVKALKGVDFELRRGEIHAIAGENGAGKSTLMNIIDGILQPDSGEIRLDG 67          
BLAST of CK936639 vs. ExPASy Swiss-Prot
Match: METN_BRUSU (Methionine import ATP-binding protein metN OS=Brucella suis GN=metN PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  382 NGSSKSENVN-TLFEPEDDGDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISD 657
            +G+S+      T+ +P      ++E ++V + FGE   + GVS  +  GE +GIIG SG GKST+++ + GL  PD G ++I GR+   L  D
Sbjct:    8 SGTSRHRRTTVTIEKPPATSAPIVEMKDVRRMFGETAAINGVSLSVARGEILGIIGRSGAGKSTLIRCVNGLEKPDTGSIHIEGREITSLDED 100          
The following BLAST results are available for this feature:
BLAST of CK936639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AB13I_ARATH2.906e-4675.19Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplast... [more]
POTA_LEGPH7.988e-1247.62Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LEGPA7.988e-1247.62Spermidine/putrescine import ATP-binding protein p... [more]
SSUB1_NOCFA1.780e-1147.69Aliphatic sulfonates import ATP-binding protein ss... [more]
POTA_LEGPL1.780e-1147.62Spermidine/putrescine import ATP-binding protein p... [more]
NODI_RHISN3.035e-1134.86Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI1_RHIME3.964e-1137.50Nod factor export ATP-binding protein I OS=Rhizobi... [more]
Y5533_VIBVU5.178e-1146.97Putative ABC transporter ATP-binding protein VV2_1... [more]
RBSA_SILST5.178e-1147.69Ribose import ATP-binding protein rbsA OS=Siliciba... [more]
METN_BRUSU5.178e-1136.56Methionine import ATP-binding protein metN OS=Bruc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004519_H07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936639 ID=CK936639; Name=CK936639; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGGGCAGCTTTTAAATCACAAAATTATCAAAACCCAGTAGTGGAAA
TGCTTCGAAAACCACTTTTTATGTCAACTTCCATTGATTATTCTATTTTA
TTTTATTTTTTTCATTTTGTGGTTTTTAGACCAAATATCAATCTGCGTCT
GCTTTACAATTATAAACACCGAAAATGGTCTCTTTATCTTCATCTGGTTC
ACTGTTATTTCCTCTCGCAACAAAAAGTGTTAGTTCTCGATTGTCTACAC
TTGCTAATTCGGGCAAAAAGCCGATCAATTCGTTCTATTATAAGGCGAAA
GAAGAACAGAGAAAAGTCGTTTGTGCTTGTGTAGCGCCTCCAAGGGACTT
GGGCACTGATGGATTCCCTGCCACCAAATTCAATGGTTCATCTAAATCAG
AGAATGTTAATACCTTATTCGAACCCGAGGATGATGGTGATGTTCTCATC
GAGTGTCGGAATGTTTACAAGTCATTTGGGGAAAAGCATATATTGAGAGG
TGTGAGCTTCAAGATTAGACATGGTGAAGCTGTTGGTATAATAGGGCCTT
CAGGCACTGGGAAATCAACGATTTTAAAGATTATTGCTGGGCTTCTTGCT
CCAGACAAGGGAGAGGTTTACATTCGAGGTAGGAAGAGAGCTGGTTTGAT
TAGCGATGAGGAGATATCTGGTCTTCGGATTGGATTGGTATGAAAATTCG
AAGATGCTTGATGAACAAATTT
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