CK936622

Overview
NameCK936622
Unique NameCK936622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.813e-41
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 2
Query:   98 PTAIAPATSVHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            PTA APATSV+ELLECP CT SMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLELPCK+Y+LGC
Sbjct:   49 PTATAPATSVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGC 129          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.368e-41
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 2
Query:  107 IAPATSVHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            I+PATSV+ELLECP CTNSMYPPIHQCHNGHTLCSTCK+RVHNRCPTCRQELGDIRCLALEKVAESLELPCKYY+LGC
Sbjct:   34 ISPATSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYNLGC 111          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.451e-38
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 2
Query:  119 TSVHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            TSVHELLECP CTNSMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEKVAESLELPCK+  LGC
Sbjct:   55 TSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKHMSLGC 128          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 2
Query:  116 ATSVHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            +  V+ELLECP CTN MYPPIHQC NGHTLCS+CK RV N CPTCR ELG+IRCLALEKVAESLE+PC+Y +LGC
Sbjct:   48 SNGVYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGC 122          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.902e-31
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 2
Query:  125 VHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            V+ELLECP CTN MYPPIHQC NGHTLCS CK RV N CPTCR ELG+IRCLALEKVAESLE+PC+Y +LGC
Sbjct:   54 VYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQNLGC 125          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.498e-16
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  131 ELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            ++L+CP C  ++  P+ QC NGH  CS+C  ++ N+CP C   +G IRC A+E+V ES+ +PC+Y  LGC
Sbjct:   41 DILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRYADLGC 110          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SIAH1_DANRE (E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.309e-15
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  110 APATSVHELLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            A  + +  L ECP C + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC
Sbjct:   30 ASNSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGC 105          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SINAL_DROME (Probable E3 ubiquitin-protein ligase sinah OS=Drosophila melanogaster GN=sinah PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  134 LLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            LLECP C   + PPI QC  GH +CSTC++++   CP CR  + +IR LA+EKVA  L  PCK+ H GC
Sbjct:  103 LLECPVCFGYIMPPIMQCPRGHLICSTCRSKL-TICPVCRVFMTNIRSLAMEKVASKLIFPCKHSHFGC 170          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  134 LLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            L ECP C + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGC 105          
BLAST of CK936622 vs. ExPASy Swiss-Prot
Match: SIAH1_HUMAN (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  134 LLECPGCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYHLGC 340
            L ECP C + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EKVA S+  PCKY   GC
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGC 105          
The following BLAST results are available for this feature:
BLAST of CK936622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SINA4_ARATH1.813e-4191.36E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA5_ARATH2.368e-4193.59E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH2.451e-3893.24E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA1_ARATH1.701e-3177.33Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SINA2_ARATH2.902e-3180.56E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINL6_ARATH4.498e-1645.71Putative E3 ubiquitin-protein ligase SINA-like 6 O... [more]
SIAH1_DANRE1.309e-1549.35E3 ubiquitin-protein ligase Siah1 OS=Danio rerio G... [more]
SINAL_DROME1.709e-1552.17Probable E3 ubiquitin-protein ligase sinah OS=Dros... [more]
SIAH1_RAT1.709e-1553.62E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg... [more]
SIAH1_HUMAN1.709e-1553.62E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_B03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936622 ID=CK936622; Name=CK936622; organism=Citrus sinensis; type=EST; length=342bp
TCTTCATCACCATCAATTTGCATCATCAAAGCCTCACAATAATGCCATCA
ACAACAATAATGCAGCAAACACTAATGGCATCAATGGTATTGTGGGTCCC
ACGGCGATCGCCCCTGCCACCAGTGTTCATGAGTTGCTTGAATGCCCTGG
GTGCACCAATTCTATGTACCCACCAATCCATCAGTGCCACAACGGACACA
CACTTTGTTCCACTTGTAAAACAAGGGTACACAACCGGTGCCCCACTTGT
AGACAGGAGCTCGGAGATATTAGGTGTTTAGCATTGGAGAAGGTGGCTGA
ATCACTTGAACTGCCATGCAAGTATTACCACCTGGGTTGCAC
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