CK936617

Overview
NameCK936617
Unique NameCK936617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1946 contig Csv1_Contig1946:1..611. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_CITSI (Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 50/67 (74.63%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 VRKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            VRKHKSTVRAFLKR                 ALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ
Sbjct:  443 VRKHKSTVRAFLKRLGSELLEEFLMEEEHVLALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 509          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_PLETI (Maturase K OS=Pleiogynium timorense GN=matK PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 VRKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            VRKHK+TVRAFLKR                 +L+FPRASSTSRR  LYRGRIWYLDIFCINDLVN++
Sbjct:  441 VRKHKNTVRAFLKRLGSEFVEEFLTEEEHVLSLIFPRASSTSRR--LYRGRIWYLDIFCINDLVNHE 505          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_CERBE (Maturase K OS=Cercocarpus betuloides GN=matK PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +L+FPRASST  RFY  RGRIWYLDIFCINDLVN++
Sbjct:  440 RKHKSTVRTFLKRLGSKLLEEFFTEEEQILSLIFPRASSTLTRFY--RGRIWYLDIFCINDLVNHE 503          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_POTAN (Maturase K OS=Potentilla anserina GN=matK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 40/66 (60.61%), Postives = 44/66 (66.67%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 ALLFPR SSTS+R  LYRG+IWYLDI CINDLVN++
Sbjct:  437 RKHKSTVRTFLKRLGPKLLDEFFTEEEQVFALLFPRTSSTSKR--LYRGQIWYLDILCINDLVNHE 500          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_HYDMC (Maturase K OS=Hydrangea macrophylla GN=matK PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.406e-13
Identity = 39/64 (60.94%), Postives = 41/64 (64.06%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVN 197
            RKHKSTVRAFLKR                 +L FPRASSTSR  +LYR RIWYLDI CINDL N
Sbjct:  441 RKHKSTVRAFLKRVGSELLEEFFTEEEPVLSLTFPRASSTSRGLWLYRRRIWYLDIICINDLAN 504          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_CANSA (Maturase K OS=Cannabis sativa GN=matK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +L+FPR  ST RR  LY+GRIWYLDIFCINDLVNY+
Sbjct:  444 RKHKSTVRTFLKRLGSELLDEFFTEEEEVLSLIFPRTYSTLRR--LYKGRIWYLDIFCINDLVNYE 507          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_ROSST (Maturase K OS=Rosa stellata GN=matK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +LLFPR SST +RFY  RGRIWYLDI CINDLVN++
Sbjct:  442 RKHKSTVRTFLKRLGPKLLDEFFTEEEQIFSLLFPRTSSTLKRFY--RGRIWYLDILCINDLVNHE 505          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_ROSRU (Maturase K OS=Rosa rugosa GN=matK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +LLFPR SST +RFY  RGRIWYLDI CINDLVN++
Sbjct:  440 RKHKSTVRTFLKRLGPKLLDEFFTEEEQIFSLLFPRTSSTLKRFY--RGRIWYLDILCINDLVNHE 503          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_ROSMU (Maturase K OS=Rosa multiflora GN=matK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +LLFPR SST +RFY  RGRIWYLDI CINDLVN++
Sbjct:  440 RKHKSTVRTFLKRLGPKLLDEFFTEEEQIFSLLFPRTSSTLKRFY--RGRIWYLDILCINDLVNHE 503          
BLAST of CK936617 vs. ExPASy Swiss-Prot
Match: MATK_ROSGI (Maturase K OS=Rosa gigantea GN=matK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 39/66 (59.09%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    6 RKHKSTVRAFLKRXXXXXXXXXXXXXXXXXALLFPRASSTSRRFYLYRGRIWYLDIFCINDLVNYQ 203
            RKHKSTVR FLKR                 +LLFPR SST +RFY  RGRIWYLDI CINDLVN++
Sbjct:  440 RKHKSTVRTFLKRLGPKLLDEFFTEEEQIFSLLFPRTSSTLKRFY--RGRIWYLDILCINDLVNHE 503          
The following BLAST results are available for this feature:
BLAST of CK936617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
MATK_CITSI1.551e-2074.63Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1[more]
MATK_PLETI1.150e-1564.18Maturase K OS=Pleiogynium timorense GN=matK PE=3 S... [more]
MATK_CERBE6.310e-1460.61Maturase K OS=Cercocarpus betuloides GN=matK PE=3 ... [more]
MATK_POTAN1.076e-1360.61Maturase K OS=Potentilla anserina GN=matK PE=3 SV=... [more]
MATK_HYDMC1.406e-1360.94Maturase K OS=Hydrangea macrophylla GN=matK PE=3 S... [more]
MATK_CANSA1.836e-1359.09Maturase K OS=Cannabis sativa GN=matK PE=3 SV=1[more]
MATK_ROSST2.398e-1359.09Maturase K OS=Rosa stellata GN=matK PE=3 SV=1[more]
MATK_ROSRU2.398e-1359.09Maturase K OS=Rosa rugosa GN=matK PE=3 SV=1[more]
MATK_ROSMU2.398e-1359.09Maturase K OS=Rosa multiflora GN=matK PE=3 SV=1[more]
MATK_ROSGI2.398e-1359.09Maturase K OS=Rosa gigantea GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936617 ID=CK936617; Name=CK936617; organism=Citrus sinensis; type=EST; length=611bp
GGGTTCGTAAACATAAAAGTACTGTACGCGCTTTTTTAAAAAGATTAGGT
TCGGAATTATTGGAAGAATTCCTTATGGAGGAAGAACACGTTCTTGCTTT
ACTCTTTCCAAGAGCTTCGTCTACTTCGCGTAGGTTCTATTTATATAGAG
GACGGATTTGGTATTTGGATATTTTTTGTATCAACGATCTGGTTAATTAT
CAATGATTGGTTACGAGACTATGTCATTTTGAAATGATTCCTAAACAATC
AATCGATAACAAAAAAATTCATTCATTTGTATTAAATGTTCATACAATAA
GAATAATAAAATAAAGGTTGATTAATTGAGTTATTCAACTTTTTTAATGT
CTTAGGATTTGGGAAGAAAGGGAGTTTTTGATGTTATACATAGGGAAAGC
TGTGTGCAATGAAAAATGCATGCACGGCTTGGGGAGGGATTTTGTTTACC
TATTTAACAAGGAAGTTTTCTACTCCATCCGACTAGTTCCGGGTTCGAGT
CCCGGGCAACCCATTCTTATTATTATATTGACATCATATATCGATATAAA
TAGGTATTCAATTTTTTTAACTTACTACTTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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