CK936614

Overview
NameCK936614
Unique NameCK936614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1652..2222. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.293e-63
Identity = 133/167 (79.64%), Postives = 134/167 (80.24%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQF 502
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQAQAAPLTVEE+IMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RFLLQEQF
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQEAIQEQKERFLLQEQF 507          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.210e-61
Identity = 129/166 (77.71%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEE+IMTIYTGTNGYLDSLEIGQVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQKERFLLQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.065e-61
Identity = 128/166 (77.11%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE+IMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLKEAIQEQMERFILQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.600e-61
Identity = 127/166 (76.51%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF++QEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFVELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKEAIQEQKERFVIQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.600e-61
Identity = 128/165 (77.58%), Postives = 131/165 (79.39%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 496
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQE
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETILKEAIQEQMERFLLQE 505          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 126/166 (75.90%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 126/166 (75.90%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 126/166 (75.90%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 126/166 (75.90%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEE+I+TIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQILTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEAILKEAIQEQRERFILQEQ 506          
BLAST of CK936614 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 126/166 (75.90%), Postives = 132/166 (79.52%), Query Frame = 2
Query:    2 GQIFLPADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEERIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 499
            GQIFL ADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEE+IMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  341 GQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506          
The following BLAST results are available for this feature:
BLAST of CK936614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CITSI1.293e-6379.64ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_EUCGG1.210e-6177.71ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DAUCA2.065e-6177.11ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_MANES4.600e-6176.51ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_CARPA4.600e-6177.58ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_TOBAC6.007e-6175.90ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO6.007e-6175.90ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY6.007e-6175.90ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_HELAN6.007e-6175.90ATP synthase subunit alpha, chloroplastic OS=Helia... [more]
ATPA_ATRBE6.007e-6175.90ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936614 ID=CK936614; Name=CK936614; organism=Citrus sinensis; type=EST; length=571bp
CGGGCAAATATTCTTACCTGCGGATTTATTCAATGCTGGAATCAGACCCG
CTATTAATGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATT
AAAGCTATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATT
CGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTA
CTCAGAACCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAG
GCCCAAGCAGCCCCTCTCACGGTGGAAGAACGGATAATGACTATTTATAC
AGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAAT
TTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTCCAA
GAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCTTTT
GCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAACAAT
TCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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