CK936607

Overview
NameCK936607
Unique NameCK936607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12293 contig Csv1_Contig12293:415..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.942e-38
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.259e-37
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.663e-37
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLV VGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.248e-37
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLV VGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 8.160e-37
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLV VGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 8.160e-37
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLV VGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 6.908e-36
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.010e-35
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 9.974e-35
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLV VGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CK936607 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.003e-31
Identity = 67/87 (77.01%), Postives = 74/87 (85.06%), Query Frame = 1
Query:   85 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVLVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 345
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+ VGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of CK936607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ1.942e-3889.66Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D_PIMBR1.259e-3786.21Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1B2_ARATH3.663e-3787.36Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH6.248e-3782.76Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH8.160e-3781.61Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH8.160e-3787.36Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D1_ORYSJ6.908e-3685.06Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ2.010e-3583.91Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU9.974e-3583.91Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT3.003e-3177.01Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_E03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936607 ID=CK936607; Name=CK936607; organism=Citrus sinensis; type=EST; length=517bp
GGGGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCA
ATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTTTGGATGTAA
AGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAGGCAGTTAGA
AGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGTCCTAGT
CGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCGTTGACGATC
TTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCTGAGCCCTGC
AATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAAAATTTAAGA
ATCCTCTCATTGTTTTGCCTTATAGTGCAGCCATTTTTGGCTGCAATTTA
GTTTTTGTCGTTTTAATTGTGTTCTGCTTTTTAATGGTTTTGCTTGGCCT
GCATTTTCCGTTGCTAAATTGAGAAGAAATGACGAGATGATCTTTCAAAT
TTCCTTGAAAAAAAAAA
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