CK936599

Overview
NameCK936599
Unique NameCK936599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936599_ssr468 microsatellite CK936599_ssr468:468..479. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:151..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.848e-32
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   94 VLC--FCAFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            VLC      +V AP T A++CGQV+ SLAP I++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+N   AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:    8 VLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.565e-32
Identity = 63/108 (58.33%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   94 VLCFCAFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            V+  C  +V+ P+  AITCGQV+ +LAP I ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   12 VVALC-MVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.479e-31
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   94 VLCFCAFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            V+  C  +V+ P+  A+TCGQV+ +LAP IA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+N N AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   12 VVALC-MVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.479e-31
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  142 ITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            ITCGQV+ SLAP I +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.144e-30
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  109 AFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            A  +   V +AITCGQVT SLAP I ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   14 ALCMAVSVAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.513e-28
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  142 ITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            ITCGQV+ +LAP I ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.511e-28
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   91 FVLCFCAFLVTAPVTNA---ITCGQVTGSLAP*IAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRV 414
            FV     ++V A   NA   +TCGQVTG+LAP + +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:    8 FVAMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.185e-27
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   94 VLCFCAFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            VLC    +V AP   AITCGQVT +LAP +A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   12 VLCM---VVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.185e-27
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  142 ITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            ITCGQV+ SLAP I ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK936599 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  109 AFLVTAPVTNAITCGQVTGSLAP*IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINDNVAAGLPRQCGVSIPYKISPNTDCSRVR 417
            A  +   V +AITC QV+ +LAP I ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   14 ALCMAVSVAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CK936599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP_HELAN3.848e-3261.82Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU6.565e-3258.33Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV9.479e-3155.56Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI9.479e-3169.57Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MALDO6.144e-3059.22Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE1.513e-2863.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_DAUCA7.511e-2855.36Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_TOBAC2.185e-2759.26Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PRUAR2.185e-2761.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PYRCO8.304e-2752.43Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_D05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936599 ID=CK936599; Name=CK936599; organism=Citrus sinensis; type=EST; length=605bp
GGGGACTCAGGCTNNNNACCAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCNTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTTGGTGACTGCCCCAGTGACTAATGCCATAACATGT
GGGCAGGTAACAGGCTCCTTGGCTCCATGAATCGCTTTCTTGAGAACTGG
AGGGCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACG
GCGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAG
CAAGCTTACCGATCAATCCCCGGCATCAACGATAATGTTGCCGCTGGCCT
TCCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTG
ACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAG
TATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTC
TTTGTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTT
TGTATCTTTGCTTTTAATATCATATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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