CK936590

Overview
NameCK936590
Unique NameCK936590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:217..594. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.773e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVM VIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.574e-24
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL+ ICLNSALYSSSF F KLPEAYAFLNPIVDVM VIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL+ ICLNSALYSS+F FAKLPEAYAFLNPIVDVM VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.019e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL+ ICLNS LYSSSF  AKLPEAYAFLNPIVDVM VIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.331e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD M VIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.331e-23
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD M VIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.270e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL++ICLNSALYSS F F KLPEAYAFLNPI+D M VIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.965e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIF L+ ICLNS LYSSSF FAKLPEAYAF NPI+DVM +IPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.872e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL+ ICLNSALYSSS  FAKLPEAYAFLNPIVD+M VIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of CK936590 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.058e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  136 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMLVIPVLFFLLAFVWQAAVSFR 318
            MLNIFSL+ IC+NSAL+SSSF FAKLPEAYAF NPIVDVM VIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of CK936590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
PSBK_CITSI5.773e-2798.36Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_JASNU4.574e-2490.16Photosystem II reaction center protein K OS=Jasmin... [more]
PSBK_VITVI7.803e-2488.52Photosystem II reaction center protein K OS=Vitis ... [more]
PSBK_MORIN1.019e-2390.16Photosystem II reaction center protein K OS=Morus ... [more]
PSBK_GOSHI1.331e-2388.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA1.331e-2388.52Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_COFAR2.270e-2385.25Photosystem II reaction center protein K OS=Coffea... [more]
PSBK_PHAAO2.965e-2385.25Photosystem II reaction center protein K OS=Phalae... [more]
PSBK_PANGI3.872e-2386.89Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_LIRTU5.058e-2386.89Photosystem II reaction center protein K OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_E06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936590 ID=CK936590; Name=CK936590; organism=Citrus sinensis; type=EST; length=378bp
TTTTGTTTTGATCGGGTCGGTTCCAACAAGTTTTTTTTGTAAACCTTACT
TTCTTTTCTTCATTTTTATCTAAAATCAATAAGATATTAATAACTCAATC
AAAATAAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTT
AGTTTAATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTT
ATTCGCTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATG
TTATGCTAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAA
GCTGCTGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCA
TGATTTATTCTAGTTCGAAAAAAAAAAA
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