EL492594

Overview
NameEL492594
Unique NameEL492594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.103e-29
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  191 EDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQI 424
            EDL +DLDKVVFMHG D+EGHPVCYNV+GEFQNKELY+  FSD+EKR  FL+ RIQFLE+SIRKLDFS  G+ TI Q+
Sbjct:  203 EDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSSGGVSTIFQV 280          
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.382e-28
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  191 EDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQI 424
            E+LG+DLDKVVFM G DKE HPVCYNV+GEFQNK+LY   FSD+EKR +FL+WRIQFLEKSIR LDF   G+ TI Q+
Sbjct:  378 ENLGDDLDKVVFMQGQDKENHPVCYNVYGEFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQV 455          
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  188 EDLG-NDLD-KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQIT 424
            EDLG  DL+ KV +M G DKEGHPVCYN +G F+ KE+Y   F D+EK  KFL+WR+Q LE+ ++ L F P G+ +I+Q+T
Sbjct:  121 EDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQVT 201          
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.602e-19
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = -3
Query:  188 EDL-GNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQIT 424
            EDL G++ +K+VF HGVDK+GH V Y+ +GEFQNKE+    FSD EK +KFLKWRIQF EK +R LDFSP    + V ++
Sbjct:  404 EDLEGSEFEKLVFTHGVDKQGHVVIYSSYGEFQNKEI----FSDKEKLSKFLKWRIQFQEKCVRSLDFSPEAKSSFVFVS 479          
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.342e-15
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  221 NDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS 412
            ++ +K+VF HGVDKEGH V Y+ +GEFQNKEL    FSD EK  KFL WRIQ  EK +R +DFS
Sbjct:  300 SEFEKMVFAHGVDKEGHVVIYSSYGEFQNKEL----FSDKEKLNKFLSWRIQLQEKCVRAIDFS 359          
BLAST of EL492594 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.938e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = -3
Query:  191 EDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQI 424
            E+ G DL    +M+GVD+E HPVCYNV  E    ELY      ++ R KFL+WR Q +EK I+KL+  P G+ +++QI
Sbjct:  259 EEFGEDLATAAYMNGVDRESHPVCYNVHSE----ELYQT-IGSEKNREKFLRWRFQLMEKGIQKLNLKPGGVTSLLQI 331          
The following BLAST results are available for this feature:
BLAST of EL492594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL3_ARATH8.103e-2974.36Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH1.382e-2871.79Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL6_ARATH1.061e-2054.32Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL2_ARATH7.602e-1957.50Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL1_ARATH1.342e-1560.94Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL4_ARATH1.938e-1446.15Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC3941 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3941, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492594 ID=EL492594; Name=EL492594; organism=Citrus sinensis; type=EST; length=426bp
GATGAGTCCTGAGTAATGGGATCACTACGCAGTCAGGCTCTCAAGCTGAT
TTGGGCTCACATCAAGCAACACAATCTTCAGGACCCTGAGGACAAGAAGG
TCATTATTTGCGATGAGAAACTGAAGAAGATTTTTGGAGGAAGGGACAGG
GTTGGGTTCCTTGAGATTGCAGGGTTGATGAGTCCTGAGTAATCTGAACA
ATAGTGCAGATACCACTGGGACTGAAATCAAGCTTCCGAATACTCTTCTC
CAAGAACTGAATCCTCCACTTCAAGAACTTGGTACGCTTCTCATCATCAG
AAAAGTTATTGTGGTACAACTCCTTGTTCTGGAATTCACCAAACACATTG
TAGCACACGGGGTGACCTTCTTTATCGACTCCATGCATAAACACCACTTT
ATCCAAGTCATTACCAAGGTCTTCTT
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