CK936581

Overview
NameCK936581
Unique NameCK936581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936581_ssr15 microsatellite CK936581_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1942 contig Csv1_Contig1942:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: ALA1_ARATH (Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.785e-50
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 KALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVA 414
            +ALVYAAAAYGF+LIERTSGHIVI+++G+ QRFNV+GLHEFDSDRKRMSVILG PD +V LFVKGAD+SM  V+ ++    VI  T+  LHAYSS GLRTLVVGMREL+ SEFEQW SSFEAAS AL GRA LLRKVA
Sbjct:  567 QALVYAAAAYGFLLIERTSGHIVINVRGETQRFNVLGLHEFDSDRKRMSVILGCPDMSVKLFVKGADSSMFGVMDESYG-GVIHETKIQLHAYSSDGLRTLVVGMRELNDSEFEQWHSSFEAASTALIGRAGLLRKVA 703          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: YOOC_SCHPO (Probable phospholipid-transporting ATPase C887.12 OS=Schizosaccharomyces pombe GN=SPBC887.12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.961e-19
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVA 414
            ALV  AA+ G+  + R    + + I G+ + + ++ + EF+S RKRMS++   PD  + L+VKGADT ++  +A   +   ++ T  HL  Y+++GLRTL + MRE+   E+++W + FE A+++L  RA  L   A
Sbjct:  615 ALVKGAASIGYKFLARKPHLVTVSIFGKDESYELLHICEFNSTRKRMSIVFRCPDGKIRLYVKGADTVIMERLAS--DNPYLQTTIHHLEDYATVGLRTLCIAMREVPEDEYQRWSTVFETAASSLVDRAQKLMDAA 749          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: AT8A2_MOUSE (Probable phospholipid-transporting ATPase IB OS=Mus musculus GN=Atp8a2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRK 408
            ALV  A   GF+   RT   ++I+  GQ Q F ++ + EF SDRKRMSVI+ LP   + L+ KGAD  +   ++K  +   +  T  HL  +++ GLRTL V   +LS +E+E+W   ++ AS  L  RA  L +
Sbjct:  490 ALVKGAKKLGFVFTGRTPYSVIIEAMGQEQTFGILNVLEFSSDRKRMSVIVRLPSGQLRLYCKGADNVIFERLSK--DSKYMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASIILKDRAQRLEE 622          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: AT8A2_HUMAN (Probable phospholipid-transporting ATPase IB OS=Homo sapiens GN=ATP8A2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.168e-18
Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRK 408
            ALV  A   GF+   RT   ++I+  GQ Q F ++ + EF SDRKRMSVI+  P   + L+ KGAD  +   ++K  +   +  T  HL  +++ GLRTL V   +LS +E+E+W   ++ AS  L  RA  L +
Sbjct:  490 ALVKGAKKLGFVFTARTPFSVIIEAMGQEQTFGILNVLEFSSDRKRMSVIVRTPSGRLRLYCKGADNVIFERLSK--DSKYMEETLCHLEYFATEGLRTLCVAYADLSENEYEEWLKVYQEASTILKDRAQRLEE 622          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: ATC3_YEAST (Probable phospholipid-transporting ATPase DRS2 OS=Saccharomyces cerevisiae GN=DRS2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.698e-18
Identity = 50/139 (35.97%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQ--GQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVA 414
            ALV   A  G+  I R    + + ++  G+ + + ++ + EF+S RKRMS I   PD ++ LF KGADT ++  +    N   +  T  HL  Y+S GLRTL + MR++S  E+E+W S +  A+  L  RA  L + A
Sbjct:  657 ALVQGGADLGYKFIIRKGNSVTVLLEETGEEKEYQLLNICEFNSTRKRMSAIFRFPDGSIKLFCKGADTVILERLDDEAN-QYVEATMRHLEDYASEGLRTLCLAMRDISEGEYEEWNSIYNEAATTLDNRAEKLDEAA 794          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: ATC5_YEAST (Probable phospholipid-transporting ATPase DNF1 OS=Saccharomyces cerevisiae GN=DNF1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 51/146 (34.93%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLP------DKTVTLFVKGADTSMVSVIAKALNMN---VIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVA 414
            ALV  A   GF  + +T   ++I++QG ++ F ++ + EF+S RKRMS I+ +P      +    L  KGAD+ + S +++    N   ++  T  HL  Y++ GLRTL +  RELS SE+E+W   ++ A+ +L  R   L  VA
Sbjct:  803 ALVATARDVGFSFVGKTKKGLIIEMQGIQKEFEILNILEFNSSRKRMSCIVKIPGLNPGDEPRALLICKGADSIIYSRLSRQSGSNSEAILEKTALHLEQYATEGLRTLCIAQRELSWSEYEKWNEKYDIAAASLANREDELEVVA 948          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: AT8A1_MOUSE (Probable phospholipid-transporting ATPase IA OS=Mus musculus GN=Atp8a1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRK 408
            ALV AA    F+   RT   ++ID  GQ +R+ ++ + EF S RKRMSV++  P   + L+ KGADT +   +A+      I  T  HL  +++ GLRTL   + E+S S+FE+W++ +  AS ++  R   L +
Sbjct:  495 ALVRAAKQLNFVFTGRTPDSVIIDSLGQEERYELLNVLEFTSARKRMSVVVRTPSGKLRLYCKGADTVIYERLAETSKYKEI--TLKHLEQFATEGLRTLCFAVAEISESDFEEWRAVYHRASTSVQNRLLKLEE 627          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: AT8A1_HUMAN (Probable phospholipid-transporting ATPase IA OS=Homo sapiens GN=ATP8A1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRK 408
            ALV AA    F+   RT   ++ID  GQ +R+ ++ + EF S RKRMSVI+  P   + L+ KGADT +   +A+      I  T  HL  +++ GLRTL   + E+S S+F++W++ ++ AS ++  R   L +
Sbjct:  510 ALVRAAKQLNFVFTGRTPDSVIIDSLGQEERYELLNVLEFTSARKRMSVIVRTPSGKLRLYCKGADTVIYDRLAETSKYKEI--TLKHLEQFATEGLRTLCFAVAEISESDFQEWRAVYQRASTSVQNRLLKLEE 642          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: AT8A1_BOVIN (Probable phospholipid-transporting ATPase IA OS=Bos taurus GN=ATP8A1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.397e-17
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 ALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRK 408
            ALV AA    F+   RT   ++ID  GQ +R+ ++ + EF S RKRMSVI+  P   + L+ KGADT +   +A+      I  T  HL  +++ GLRTL   + E+S S+F++W++ +  AS ++  R   L +
Sbjct:  495 ALVRAAKQLNFVFTGRTPDSVIIDSLGQEERYELLNVLEFTSARKRMSVIVRTPSGKLRLYCKGADTVIYDRLAETSKYKEI--TLKHLEQFATEGLRTLCFAVAEISESDFQEWRAVYHRASTSVQNRLLKLEE 627          
BLAST of CK936581 vs. ExPASy Swiss-Prot
Match: ATCZ_SCHPO (Putative phospholipid-transporting ATPase C4F10.16c OS=Schizosaccharomyces pombe GN=SPAC4F10.16c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 48/138 (34.78%), Postives = 78/138 (56.52%), Query Frame = 1
Query:    1 KALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVMGLHEFDSDRKRMSVILGLPDKTVTLFVKGADTSMVSVIAKALNMNVIRGTESHLHAYSSLGLRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVA 414
            +ALV  A  +GF L+   +    I I+G+ + F V+ +  F S RKRMSVI+   D  + L  KGADT +   ++   N N+I  T+ HL ++SS G RTL +  R +   ++ +W+ +F  A++A+  R   + KV+
Sbjct:  725 EALVKVARDFGFTLLNTKNRRYTIRIRGENKNFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVIFPRLSSGQN-NIIEKTKKHLASFSSEGFRTLCIARRTIDKQDYLEWKVNFNEANSAIHERNEKVSKVS 861          
The following BLAST results are available for this feature:
BLAST of CK936581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
ALA1_ARATH4.785e-5074.64Phospholipid-transporting ATPase 1 OS=Arabidopsis ... [more]
YOOC_SCHPO1.961e-1935.77Probable phospholipid-transporting ATPase C887.12 ... [more]
AT8A2_MOUSE1.660e-1838.52Probable phospholipid-transporting ATPase IB OS=Mu... [more]
AT8A2_HUMAN2.168e-1837.78Probable phospholipid-transporting ATPase IB OS=Ho... [more]
ATC3_YEAST3.698e-1835.97Probable phospholipid-transporting ATPase DRS2 OS=... [more]
ATC5_YEAST1.076e-1734.93Probable phospholipid-transporting ATPase DNF1 OS=... [more]
AT8A1_MOUSE1.405e-1736.30Probable phospholipid-transporting ATPase IA OS=Mu... [more]
AT8A1_HUMAN1.405e-1736.30Probable phospholipid-transporting ATPase IA OS=Ho... [more]
AT8A1_BOVIN2.397e-1736.30Probable phospholipid-transporting ATPase IA OS=Bo... [more]
ATCZ_SCHPO6.973e-1734.78Putative phospholipid-transporting ATPase C4F10.16... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004520_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936581 ID=CK936581; Name=CK936581; organism=Citrus sinensis; type=EST; length=415bp
AAAGCGTTAGTTTATGCTGCTGCTGCATATGGTTTTATGCTAATAGAAAG
AACTTCGGGTCATATAGTTATTGATATTCAGGGTCAAAGGCAAAGGTTCA
ATGTCATGGGTTTACATGAGTTCGACAGTGACCGGAAGAGGATGTCGGTT
ATTTTGGGGCTCCCTGACAAGACTGTGACGCTCTTTGTAAAAGGTGCTGA
CACATCTATGGTTAGTGTGATAGCTAAAGCTTTGAATATGAATGTAATAA
GGGGAACTGAAAGCCATCTCCATGCTTACTCCTCTCTGGGTTTGAGAACA
CTCGTTGTTGGTATGCGAGAACTGAGTGCTTCCGAATTTGAGCAGTGGCA
GTCTTCCTTTGAGGCTGCTAGCAATGCTTTGTTTGGTAGGGCTGCTTTAC
TTCGCAAGGTTGCTA
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