CK936575

Overview
NameCK936575
Unique NameCK936575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2888 contig Csv1_Contig2888:600..1413. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.979e-40
Identity = 93/153 (60.78%), Postives = 109/153 (71.24%), Query Frame = 3
Query:  156 KNRTNASSSFNSAQSKDPREV----KSKKQKKGNVNDAKKEEKENSPKADSEKKVAKE-PPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMDQDNTFM 599
            K  T  SSS +   S  P  +    K++ +K  N N++K  E     K+  +K+ +KE PP DYIHVRARRGQATDSHSLAERVRREKISERM+ LQ LVPGCDKVTGKA MLDEIINYVQ LQ QVEFLSMKL S++P+ YDFG D D   +
Sbjct:   73 KTATTGSSSCDQL-SHGPSAITNTGKTRGRKARNSNNSK--EGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLDGLIL 222          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.771e-37
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 3
Query:  213 EVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMD 581
            E K  K+++   +D ++E +    K+++ K    EPPKDYIHVRARRGQATDSHSLAERVRREKI ERMK+LQ LVPGC+KVTGKA MLDEIINYVQ LQ QVEFLSMKL+SVN    DF +D
Sbjct:  261 EEKGGKRRREEEDDEEEEGEGEGNKSNNTKP--PEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVD 381          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.771e-37
Identity = 90/140 (64.29%), Postives = 105/140 (75.00%), Query Frame = 3
Query:  186 NSAQSKDPREVKSKKQKKGNVNDAKK-EEKENS-PKA------DSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMD 581
            +S +    R+ KSK+     V+ +K+ EEKE+S PK       + +K  + +P KDYIHVRARRGQATDSHSLAERVRREKISERMK+LQ LVPGC+KVTGKA MLDEIINYVQ LQ QVEFLSMKL+SVN    DF MD
Sbjct:  199 SSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRL-DFNMD 337          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.152e-37
Identity = 90/150 (60.00%), Postives = 112/150 (74.67%), Query Frame = 3
Query:  153 RKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKE-NSP--KADSEKKVAKE---PPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMD 581
            +K + N   +  +AQS   R  +S+++   N ++ + +E+  NSP  K++S K+  K+   PPKD YIHVRARRGQAT+SHSLAERVRREKISERMK LQ LVPGC+KVTGKA MLDEIINYVQ LQ QVEFLSMKLA+VNP   DF ++
Sbjct:  236 KKRKRNGQKNSEAAQSH--RSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQM-DFNLE 382          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.958e-36
Identity = 89/153 (58.17%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  171 ASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSE---KKVAKEP--PKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMDQDNTFMVRPDD 614
            ASSS  ++ SK   E    K  K +  D     K    K DS+   K  AK P  PKDYIHVRARRGQATDSHSLAER RREKISERM +LQ LVPGC+++TGKA MLDEIINYVQ LQ QVEFLSMKLA+VNP          +T M++P +
Sbjct:  130 ASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQPGE 282          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.440e-36
Identity = 88/151 (58.28%), Postives = 102/151 (67.55%), Query Frame = 3
Query:  144 DKKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKK----EEKENSPKADSEKKVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMD 581
            +KK+K   N        + +   + K  +Q  G+    KK     +KE +  ++   KV KE  K DYIHVRARRGQATDSHS+AERVRREKISERMK LQ LVPGCDK+TGKA MLDEIINYVQ LQ Q+EFLSMKLA VNP   DF MD
Sbjct:  105 EKKKKMTMNRDDLVEEGEEE---KSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR-PDFDMD 251          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.269e-35
Identity = 82/133 (61.65%), Postives = 95/133 (71.43%), Query Frame = 3
Query:  156 KNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVN 554
            K R + S S     +    E ++K+QK   V D K E +    + + +KK   EP KDYIHVRARRGQATDSHSLAER RREKISERMKILQ LVPGC+KV GKA +LDEIINY+Q LQ QVEFLSMKL +VN
Sbjct:   76 KRREDESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTETE-QKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 207          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.074e-34
Identity = 82/136 (60.29%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  174 SSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPMFYDFGMD 581
            SS       KD  E + KKQK       ++    N+ K +SEK+ +      YIH+RARRGQAT+SHSLAERVRREKISERMK LQ LVPGCDKVTGKA MLDEIINYVQ LQ Q+EFLSMKL++VNP+  DF ++
Sbjct:  174 SSKKRKRIGKDCEEEEDKKQKD------EQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVL-DFNLE 302          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.332e-34
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 3
Query:  201 KDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKD-YIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNP 557
            +DP+    + QKK + ND  KE        + E   ++E PK+ YIH+RARRGQAT+SHSLAERVRREKISERM++LQ+LVPGC+K+TGKA MLDEIINYVQ LQ QVEFLSMKLA+VNP
Sbjct:  166 EDPQRGNDQSQKK-HKNDQSKET------VNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP 278          
BLAST of CK936575 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  168 NASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKAD----SEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVN 554
            ++SSS N  +    ++ K    + GN + + + E E S        +E+K   EPPKDYIHVRARRGQATD HSLAER RREKISE+M  LQ ++PGC+K+ GKA +LDEIINY+Q LQ QVEFLSMKL  VN
Sbjct:   92 SSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVN 224          
The following BLAST results are available for this feature:
BLAST of CK936575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
BH137_ARATH4.979e-4060.78Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH078_ARATH1.771e-3766.67Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH062_ARATH1.771e-3764.29Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH049_ARATH5.152e-3760.00Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH077_ARATH1.958e-3658.17Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH063_ARATH7.440e-3658.28Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BPE_ARATH1.269e-3561.65Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH076_ARATH1.074e-3460.29Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH074_ARATH5.332e-3465.00Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH079_ARATH3.821e-3255.64Transcription factor bHLH79 OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004520_G12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936575 ID=CK936575; Name=CK936575; organism=Citrus sinensis; type=EST; length=814bp
GGGATCATCACAGTGATGATAATTGTAATGAGCCTTCTAATAATAATTCT
TTAGCCACCAAAAACCAAAGCACTGCAGTGTCTTCAACTGAGCAGCAGGT
CACTCAGAGTACTGTGACGACTACCGCTACTACTACTCGTATGGACAAGA
AAAGGAAGAACAGAACTAATGCTTCCTCTTCTTTCAATTCTGCTCAGTCA
AAGGATCCAAGAGAAGTGAAAAGCAAGAAGCAAAAGAAAGGCAATGTTAA
TGATGCCAAGAAAGAAGAAAAGGAAAATAGTCCTAAAGCTGATAGTGAGA
AGAAAGTTGCTAAAGAACCTCCAAAAGATTACATTCATGTTAGAGCAAGG
AGGGGTCAAGCAACTGACAGCCACAGCTTAGCAGAAAGGGTAAGAAGAGA
GAAAATTAGTGAGAGGATGAAAATTTTGCAAAAGCTTGTTCCTGGCTGTG
ACAAGGTAACTGGTAAGGCCTTCATGTTGGATGAAATTATCAACTATGTA
CAGTTCTTACAAAACCAAGTGGAGTTCCTCTCAATGAAGCTTGCTTCTGT
GAATCCCATGTTCTATGATTTTGGAATGGACCAAGATAACACATTCATGG
TCAGGCCAGATGATCAGCAGAATTTGAATAGCATTATTGCTGCTTCAGCT
TCAGCACCTCAAGTGCAATGCAGCCCCACAGCCCAGCTCACAGCTTTTGC
TGACACAACCACTGCCTTTGCCCCAGCTGATCATCGCAATAACTATCCTG
TTCTTGATACTGCATTTTTACTTCAACAGGGGCAGAGGCCAAATGCCTTA
ATCTATCAGGATAA
back to top