CX675154

Overview
NameCX675154
Unique NameCX675154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675154_ssr215 microsatellite CX675154_ssr215:215..226. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675154_ssr127 microsatellite CX675154_ssr127:127..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5476 contig Csv1_Contig5476:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.808e-102
Identity = 178/195 (91.28%), Postives = 189/195 (96.92%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 886
            HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKEVIKD+KWLEE FTE +QKRGG+LI+KWGRSSAASTSVSIVDA++SL+TPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELV DVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  247 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDNKWLEEEFTEKVQKRGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 441          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 6.871e-102
Identity = 177/195 (90.77%), Postives = 187/195 (95.90%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 886
            HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI+GLPVKEVIKDHKWLEE FTE +QKRGG LI+KWGRSSAASTSVSIVDA++SL+ PTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  243 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 437          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.584e-98
Identity = 170/195 (87.18%), Postives = 184/195 (94.36%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 886
            HALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G+PV EVI+D KWLE+ FT  +Q RGG+LIKKWGRSSAAST+VSIVDA++SLVTPTPEGDWFS+GVYTNGNPYGIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+I K+E ELLAEKKCVAHLTGEGIA CDLPEDTMLPGEM
Sbjct:  259 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.027e-97
Identity = 171/196 (87.24%), Postives = 183/196 (93.37%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 886
            H LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA+I+GLPVK VIKDHKWLEE FT  IQKRGG LI+KWGRSSAAST+VSI DA+KSLVTPTPEGDWFSS VYTNGNPYGIAED+VFSMPCRSKGDGDYELVKDV+FDDYLR+RI K+E+ELLAEK+C AHLTGEG+A CDLP  DTMLPGEM
Sbjct:  246 HGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGLPVKTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSSAVYTNGNPYGIAEDLVFSMPCRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGEM 441          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.303e-96
Identity = 168/195 (86.15%), Postives = 183/195 (93.85%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 886
            HALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKEVIKD KWLEE FT T+QKRGG+LI+KWGRSSAAST+VSIVDA++SLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL  DV+ DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE+
Sbjct:  238 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTLTVQKRGGVLIQKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.062e-94
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = -3
Query:  305 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGE 886
            HALTRLDENRAKCQ+ALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+I+D KWLEE FT T+QKRGG+LI+KWGRSSAAST+VSIVDA+KSLVTPTPEG+WFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE
Sbjct:  238 HALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEIIQDTKWLEEEFTMTVQKRGGVLIQKWGRSSAASTAVSIVDAIKSLVTPTPEGEWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGDAFCDLPEDTMLPGE 431          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.388e-94
Identity = 166/195 (85.13%), Postives = 180/195 (92.31%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 886
            HALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKEVIKD KWLEE FT T+QKRGG LI+KWGRSSAAST+VSI DA+KSLVTPTPEGDWFS+GVYT GNPYGIAEDIVFSMPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG A+CD+PEDTMLPGE+
Sbjct:  235 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKDTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 429          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.886e-94
Identity = 163/196 (83.16%), Postives = 181/196 (92.35%), Query Frame = -3
Query:  302 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 886
            H+LTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDF+NA+I G+PVKEVIK  KWLEE FTE ++KRGG+LI+KWGRSSAAST+VSIVDA+  L+TPTP GDWF SGVYTNGNPYGIAED+++SMPCRSKGDGDYELVKDVIFDDYLRKRI  +E+ELLAEK+C AHLTGEGIA CDLP  DTMLPGEM
Sbjct:  240 HSLTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFVNAQIGGVPVKEVIKAQKWLEEEFTEKVRKRGGVLIQKWGRSSAASTAVSIVDAINPLITPTPPGDWFPSGVYTNGNPYGIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKRCTAHLTGEGIAVCDLPAGDTMLPGEM 435          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.720e-44
Identity = 84/175 (48.00%), Postives = 126/175 (72.00%), Query Frame = -3
Query:  362 HALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 886
            +A+TRLD+NRA   L+ K+ V    VS +TIWGNHS TQVPDF+NA+I+  PV+ +I D +WLE+ F E++QKRG  +I+  G+SSAAS + +++DAM+  + PTP G WFS+ + ++GNPYGI E ++FS PCR K +G+  +V  + +D +L ++I  TEQEL  E++ V+ +
Sbjct:  153 YAMTRLDQNRATFFLSQKSQVSTKDVSCVTIWGNHSATQVPDFVNAKISQKPVETIIPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDAFLEEKIKLTEQELKEEREMVSSI 327          
BLAST of CX675154 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.456e-43
Identity = 91/174 (52.30%), Postives = 121/174 (69.54%), Query Frame = -3
Query:  362 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHL 883
            A+TRLDENRAK QLA KAGV   +V+NM IWGNHS+TQ PDF NARI G PV EVIKD +WL+  F  T+Q+RG  +IK  G SSAAS + + VD ++SL T TPEGDW+S  V ++G+ YGI + ++ S P R+  DG +E+V+ +  D + R++I  T  EL  E+  V+ L
Sbjct:  154 AMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPDFTNARIGGKPVTEVIKDTEWLKGDFITTVQQRGAAIIKARGASSAASAASAAVDTVRSLATQTPEGDWYSVAVCSDGS-YGIEKGLICSFPVRTTKDGGWEIVQGLPVDAFSREKIDATVNELKEERDAVSSL 326          
The following BLAST results are available for this feature:
BLAST of CX675154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHP_PEA1.808e-10291.28Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MEDSA6.871e-10290.77Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_FLABI1.584e-9887.18Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_MESCR1.027e-9787.24Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_MAIZE3.303e-9686.15Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP2_SORBI1.062e-9485.05Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP1_SORBI1.388e-9485.13Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP_SPIOL6.886e-9483.16Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDH_PARUW1.720e-4448.00Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_AKKM81.456e-4352.30Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60B12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B12-C24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675154 ID=CX675154; Name=CX675154; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTTTTTTCTGTGAGGTACATACTGTGATTATACATAAGGACAAA
TAATACAGAATGTAAACGTTCTTATGTGGTGTGGTATATCAGTGTCGAGT
ATTCACACATAAGGTAACCACGGCAAAAGCCAAGCCAAGCCAACTTGACT
GGACACTTCCAATCTCAAATTTCATTAAATGGTTTAATACTGGCACGTTA
TCCTGCACACTCGTAATAAATAAATAGTTCATATTCTGCCTTCTCACTCT
ACAGCTTATTGCAGTAGCAGTCATGATTTCCTAGAGCCCTAACCACGTTT
ACATTTCTCCGGGAAGCATAGTGTCCTCTGGTAGATCACAAAAAGCAATG
CCCTCTCCTGTAAGATGGGCCACACATTTCTTCTCAGCTAGCAACTCTTG
TTCGGTCTTCGCTATCCGCTTGCGAAGGTAGTCATCAAATATTACATCCT
TGACAAGTTCATAATCACCATCTCCTTTTGATCTGCATGGCATGCTGAAG
ACAATATCCTCTGCTATGCCGTAAGGATTTCCATTTGTATAAACGCCAGA
TGAAAACCAATCACCCTCGGGTGTGGGAGTTACTAGAGACTTCATGGCAT
CAACAATTGACACAGAAGTGGATGCAGCTGAAGATCTTCCCCATTTCTTA
ATCAGTAGTCCACCTCTCTTCTGGATTGTTTCAGTGAACCCCTCTTCCAG
CCATTTGTGGTCCTTGATAACCTCTTTCACAGGTAAGCCATTGATCCTAG
CATTTAGGAAGTCCGGAACCTGAGTGGTTGAGTGGTTTCCCCAGATGGTC
ATATTTGACACTTTGTCGTAGAATACACCTGCTTTAAGGGCGAGCTGGCA
TTTTGCTCTATTTTCATCTAATCTAGTCAAGGCATGAA
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