EY665820

Overview
NameEY665820
Unique NameEY665820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665820_ssr176 microsatellite EY665820_ssr176:176..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665820 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.672e-25
Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  361 ALFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAE 633
            ++  M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI +   P+K+ VYDKDTFS DD MG+AE
Sbjct:  220 SMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAE 310          
BLAST of EY665820 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.181e-23
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  373 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFTSLHFGNSKDAIG--------KAPKWNHCHEN 708
            M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+ +S  P+KL VYD DTFS DD MG+A+        S  A G        +  KW   H+N
Sbjct:  175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 294          
BLAST of EY665820 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  364 LFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFTSLHFGNSKDAIG--------KAPKWNHCHEN 708
            L  M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+QK ++ VVK+N+NP WNE+L LS+  +   +KL V+D DTFS DD MG+AE        S  A G        +  KW   H+N
Sbjct:  173 LEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 295          
The following BLAST results are available for this feature:
BLAST of EY665820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH3.672e-2557.14Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH1.181e-2346.67Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH1.886e-2143.90ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665820 ID=EY665820; Name=EY665820; organism=Citrus sinensis; type=EST; length=844bp
TTTTGGTTACTACCACACTTTAATAGTCTTAGATATCATTTCCCTTCTAA
AAGTTCTCACCAAATTGGGTTGTAATCGTGAATTGAACCATTGAAGATTA
AAGGTAACAAATCAAGCAGCCTCCAAAGCCCACCAGAATCACTTTACTCA
TTTAAGCAATTATGAAGTAATTGTCCAAGTCAAGTCAAGTTTCTAAGTCC
TTCTGTTACAGCTGCAATAAATATAAAATAATTGATGCACAGAATCAATA
GCCCAATCAGCGCGTGACTCTTTGCTTGTGATATAACATTTTCGCTTTAC
AGCATTAGCGCGAGTGTTTTTGAAAGATAATAAAGGAAAGAAAAGTTTTA
ATCTTTCATAGCGTTGTTTGCAATGGAGAATTTGATGGGTTTGCTCAGAG
TTCATGTTCTGAGAGGAGTGAATCTTGCCGTCAGAGATGTCGTCAGCAGT
GATCCTTATGTTGTGATCAAGATGGGAAAACAGAAGTTGAAGACTCGAGT
TGTGAAGAACAATGTCAATCCTGAGTGGAATGAAGATTTAACCCTCTCTA
TTTCAGACTCTAATCTTCCAATCAAGCTTACAGTTTATGACAAAGACACA
TTCAGTCCAGATGACAAAATGGGAGATGCAGAATTTACATCACTCCATTT
TGGAAACTCTAAAGATGCGATTGGAAAGGCTCCCAAATGGAACCATTGTC
ACGAAAATACAGCCAAGGCAGGGAGAACTGGCTTGCTGAAAAAAACCCCC
TTTGGCTGGGAATGATGGGAAAGCTTGTTCAAAACTTGTTTCTAAAAAAT
TCAAAAATGGTGAAGGGGGGGGGAAATTGGAAATCCCATTAAAA
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