CK936547

Overview
NameCK936547
Unique NameCK936547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936547_ssr394 microsatellite CK936547_ssr394:394..408. BLAST: Citrus ESTs to Prunus persica proteins V1
CK936547_ssr433 microsatellite CK936547_ssr433:433..447. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            K E E+  ++ ++ FTFN+LKLATRNFRP+S++GEGGFGCVFKGW++E+   P KPG GL +AVK LN +G QGH+ WL E
Sbjct:   41 KTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTE 121          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.839e-23
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            + E E+   + L+ F+ ++LK ATRNFRP+S++GEGGFGCVFKGWI+E+  AP KPG G+ +AVK LN +G QGH+ WLAE
Sbjct:   42 RTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAE 122          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            + E E+  +  L+ F+F +LK ATRNFRP+S+LGEGGFGCVFKGWI+E      +PG GL +AVK LN DG QGH+ WLAE
Sbjct:   42 RTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAE 122          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            K E E+  ++ ++ F+FN+LKLATRNFR +S++GEGGFGCVF+GW++E    P K   GL +AVK LN DG QGH+ WL E
Sbjct:   35 KTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTE 115          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            + E E+  +  L+ FTF +LK ATRNFRP+S+LGEGGFG VFKGWI+E      KPG G+ +AVK LN DG QGH+ WLAE
Sbjct:   43 RTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAE 123          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            + E E+  +  L+ FTFN+LK AT+NFR ++LLGEGGFGCVFKGWI++      +PG G+ VAVK L  +G QGHK WL E
Sbjct:   60 RTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTE 140          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.010e-20
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  640 KLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            + E E+  +  L+ FTFN+LK ATRNFRP+SLLGEGGFG VFKGWI+       KPG G+ VAVK L  +G QGHK WL E
Sbjct:   57 RTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTE 137          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  652 ELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            +L  +  L+ + F DLK AT+NF+P+S+LG+GGFG V++GW++    AP + G G+ VA+K LN + +QG   W +E
Sbjct:   64 KLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSE 140          
BLAST of CK936547 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  673 LRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGXGLTVAVKTLNHDGLQGHKGWLAE 882
            LR F++ +L  AT  F  + ++GEGGFG V+KG I  NG +   P   L VA+K LN  GLQGHK WLAE
Sbjct:   71 LRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPP---LVVAIKKLNRQGLQGHKQWLAE 137          
The following BLAST results are available for this feature:
BLAST of CK936547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BIK1_ARATH5.174e-2560.49Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
NAK_ARATH2.839e-2358.02Probable serine/threonine-protein kinase NAK OS=Ar... [more]
APK1A_ARATH1.409e-2259.26Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
Y3545_ARATH9.132e-2255.56Probable receptor-like protein kinase At3g55450 OS... [more]
APK1B_ARATH9.132e-2259.26Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK2A_ARATH7.731e-2155.56Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK2B_ARATH1.010e-2059.26Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
CX32_ARATH2.409e-1444.16Probable serine/threonine-protein kinase Cx32, chl... [more]
Y5707_ARATH7.253e-1151.43Probable receptor-like protein kinase At5g47070 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004521_B06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936547 ID=CK936547; Name=CK936547; organism=Citrus sinensis; type=EST; length=883bp
GGGGGTTGTTGCGAGATCAAGCTTGTTTGTTGATACCAAAGTAAAGTACT
TCAGTTTTGAGTTCAGACAAAAACTTGATCAATCTCAAGTTACATCCTTT
TTTATCTAGTTCATGTGATCTAGCTCTTACCTCAACAGGGTTAGTTTTTT
TATTTTTTTCCTCTTTTGCATTTTTTTCACTTGGTTTTGTCTTTTGGTTG
GTTTTGAAGTGAAAGAAAAGCTTAAATTTTGAAACTTTTTGGTGGCTCTT
AAGTGTGAGGTGAGAGTGAAGAAGTGATTTTTTGAGGGGGGGTTGATGAG
TTTTAGGGTTTGTTGAGAGACAAAAGAATGGGGTTTGATGGTGAAAATGG
GAAAGTGAGGAAGGCTTCTTGGGATTCGAGCAAATCAAAGGCAAAGAAGA
AGAAGAAGAAAGTTGAAGATGAAGTTGAAGTTGAAGAAGAAGAAGAAACT
GGGTGTTGGGTCAAGTTGAGATTTTTTGGAAGCTGCATTTCTTCAAGATC
CAAAGTTGATAGCTCCGTGAGTGGCACCAGTACCCATTATGAAAGTAAAT
CTACAAATGATACAAGTAGGGACCAACCGGCAGCTGCTGTTATCTCATCT
ACAACCACTAGTAATGCAGAAAGTAATTCCTCCACTTCTAAGCTTGAAGA
AGAGCTAAAAGTTGCTTCTCGGCTACGGAAATTCACATTTAATGATCTTA
AGTTGGCGACACGAAATTTTAGGCCTGAGAGTCTTCTTGGAGAAGGTGGT
TTTGGTTGTGTTTTCAAGGGCTGGATAGAAGAAAATGGAACTGCTCCAGT
TAAACCTGGCNNNGGACTTACTGTTGCAGTAAAAACCCTTAACCATGATG
GTCTTCAGGGTCACAAGGGATGGCTGGCGGAAG
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