EL492592

Overview
NameEL492592
Unique NameEL492592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13490 contig Csv1_Contig13490:382..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.478e-48
Identity = 88/138 (63.77%), Postives = 103/138 (74.64%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLIPFY---YTYETFGKSSVEAECPKFKAWVKRCL 414
            IPVLIHN +P+CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD   K WTTKG             LK LEG LGDKP+FGG++FG++D++LI +Y   Y YETFG  S EAECPKF AW KRC+
Sbjct:   55 IPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCM 192          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.702e-47
Identity = 87/138 (63.04%), Postives = 102/138 (73.91%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLIPFY---YTYETFGKSSVEAECPKFKAWVKRCL 414
            IPVLIHN +P+CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD   K W TKG             LK LEG LGD+P+FGG++FG++D++LI FY   Y YETFG  S EAECPKF AW KRC+
Sbjct:   55 IPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCM 192          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.548e-45
Identity = 82/137 (59.85%), Postives = 99/137 (72.26%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLIPF---YYTYETFGKSSVEAECPKFKAWVKRCL 414
            IPVLIHN +P+CES+IIVQYIDEVW DK+PL+PSDPY+R+QARFWVD+IDKK+YD   K W +KG              K LE  L DKPF+G D FG++DL LI F   +YTYET+G   +E ECPK  AWVKRC+
Sbjct:   54 IPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCM 190          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.399e-43
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLIPF---YYTYETFGKSSVEAECPKFKAWVKRCL 414
            IP+LIHNS+ +CES  I++YIDEVW DK PLLPSDPY+R+QARFW D+IDKK+Y    + W+ KG             LKTLEG+LG+K +FGGDN G++D++L+PF   +Y+YET    S+EAECPK   W K C+
Sbjct:   55 IPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCM 191          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.465e-39
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLIPF---YYTYETFGKSSVEAECPKFKAW 399
            IP+LIHN +P+CES  I++YIDEVW +K PLLPSDPYQR+QARFW ++ID K+Y    + W+ KG              KTLEG+LG+K +FGGDN G++D++L+PF   +Y+YET    S+EAEC K   W
Sbjct:   55 IPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW 186          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.337e-27
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLP-------SDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFF---GGDNFGYLDLSLIPF---YYTYETFGKSSVEAECPKFKAWVKRC 411
            IPVL+H  RPV ES +I+QY+D+ +     LLP          Y RA ARFW D++D+K+YD  ++ W  KG             L+TLE +LGD+ FF   GG   G++D++L+PF   +Y+YE  G  SVE   P+  AW +RC
Sbjct:   56 IPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRC 201          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.163e-26
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLL-PSDP------YQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFF---GGDNFGYLDLSLIPF---YYTYETFGKSSVEAECPKFKAWVKRC 411
            IPVL+H  RPV ES +I+QY+D+ +     LL P++       Y RA ARFW D++D+K+YD  ++ W  KG             L+TLE +LGD+ FF   GG   G++D++L+PF   +Y+YE  G  SVE   P+  AW +RC
Sbjct:   56 IPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRC 201          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKT-WTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDLSLI 327
            +PV +HN +P+ ES +IV+YIDE WK+  P+LPSDPYQRA ARFW  FID K+  A +K+ +T                L+ LE +L DK FFGG+ FG +D++ +
Sbjct:   57 VPVFVHNEQPIAESLVIVEYIDETWKNN-PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAV 161          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.801e-20
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDL--SLIPFYYTY--ETFGKSSVEAE-CPKFKAW 399
            +PVLIHN +P+ ES II++YIDE ++  + +LP DPY RA ARFW  F+D K+  A   T+  KG             LK L+ +L DK FF GD FG+ D+  +L+ F+     E +G   V++E  P F  W
Sbjct:   53 VPVLIHNGKPIVESMIILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKW 184          
BLAST of EL492592 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.698e-18
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   13 IPVLIHNSRPVCESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDASTKTWTTKGXXXXXXXXXXXXXLKTLEGQLGDKPFFGGDNFGYLDL--SLIPFYYTY--ETFGKSSVEAE-CPKFKAW 399
            +PVLIHN + + ES +I++YIDE ++  + +LP DPY RA ARFW  F+D K+  A  KT+  KG             LK L+ +L DK FF GD FG+ D+  +L+ F+     E  G   V +E  P F  W
Sbjct:   53 VPVLIHNGKRIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-PAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKW 184          
The following BLAST results are available for this feature:
BLAST of EL492592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GSTX4_TOBAC4.478e-4863.77Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC1.702e-4763.04Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX3_SOYBN3.548e-4559.85Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC7.399e-4354.74Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL8.465e-3952.27Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSJ3.337e-2741.10Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI2.163e-2641.10Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX6_SOYBN2.736e-2146.23Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX2_TOBAC8.801e-2041.04Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC3.698e-1840.30Probable glutathione S-transferase OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC3921 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3921, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492592 ID=EL492592; Name=EL492592; organism=Citrus sinensis; type=EST; length=415bp
GACTGCGTAGTGATCCCGGTTCTCATCCACAACAGCAGACCGGTCTGTGA
GTCATCCATCATTGTTCAGTACATTGATGAAGTGTGGAAGGACAAGGCTC
CATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGCTAGGTTCTGGGTA
GATTTCATTGACAAGAAGATGTACGATGCTTCGACGAAGACATGGACCAC
AAAGGGAGAAGAGCAGGAGGCGGCTAAGAAGGAGTTCTTTGAAGCTCTGA
AGACCTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTCGGAGGAGACAAT
TTTGGGTATTTGGATTTGAGTTTGATCCCATTCTATTACACGTATGAGAC
ATTTGGAAAGTCCAGCGTTGAGGCTGAGTGCCCCAAGTTCAAAGCTTGGG
TGAAGAGATGCTTGC
back to top