CK936538

Overview
NameCK936538
Unique NameCK936538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936538_ssr19 microsatellite CK936538_ssr19:19..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2479 contig Csv1_Contig2479:7..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.908e-56
Identity = 103/119 (86.55%), Postives = 111/119 (93.28%), Query Frame = 1
Query:  121 NQMDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            +QMDPD+V+KAFVEHYY+TFD NR GLA LYQE SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H I+TVDCQPSGPA GMLVFVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDI
Sbjct:    2 SQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.726e-39
Identity = 78/117 (66.67%), Postives = 90/117 (76.92%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            MD D+VAKAFVEHYY TFD NR  L +LYQ+GSMLTFEGQ+  G+  I  KL SLPF QC H I TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQMF L+P   G+FYV ND+
Sbjct:    1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDM 116          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.310e-29
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  130 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            D  S+A+ FV  YY TFD NR GLA LY++ SMLTFE   IQG   I+ KLTSLPFQ+ QH ++T+D QPSG  GG+LV V+G L +  E++ + ++Q F LMP   GS++VLND+
Sbjct:    3 DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDV 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.076e-28
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            MD  ++A+ F E YY  FD +R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +LV ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDI
Sbjct:    3 MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDI 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_KLULA (Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.976e-28
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            +D  S+A+ F E YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHLMP    S+YV NDI
Sbjct:    3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDI 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.462e-27
Identity = 59/117 (50.43%), Postives = 86/117 (73.50%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            MD +++A+ F E YY  FD++R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDI
Sbjct:    3 MDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_YEAST (Nuclear transport factor 2 OS=Saccharomyces cerevisiae GN=NTF2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.316e-26
Identity = 58/117 (49.57%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            +D +++A+ F + YY  FD +R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +LV ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDI
Sbjct:    3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe GN=ntf2 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.316e-26
Identity = 58/116 (50.00%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  130 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            D +++A  F + YY TFD++R+ L++LY+E SML+FEG ++QG++ IV KL SLPFQ+ QH I+T+D QP+G  G ++V V+G L L  EQ A ++SQ+FHL+    G++YVLND+
Sbjct:    3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDL 117          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.718e-26
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            +D ++VA  F   YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP  P G +LV V+G L +  EQ+A ++SQ+FHL+P    S+YV NDI
Sbjct:    3 VDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDI 118          
BLAST of CK936538 vs. ExPASy Swiss-Prot
Match: NTF2_CANAL (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.455e-25
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  127 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDI 477
            +D ++VA  F   YY  FD++R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP+   G +LV V+G L +  EQ+A ++SQ+FHL+P   GS+YV NDI
Sbjct:    3 VDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDI 118          
The following BLAST results are available for this feature:
BLAST of CK936538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_ARATH7.908e-5686.55Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ6.726e-3966.67Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
NTF2_EMENI6.310e-2953.45Nuclear transport factor 2 OS=Emericella nidulans ... [more]
NTF2_ASHGO1.076e-2852.99Nuclear transport factor 2 OS=Ashbya gossypii GN=N... [more]
NTF2_KLULA6.976e-2852.99Nuclear transport factor 2 OS=Kluyveromyces lactis... [more]
NTF2_CANGA3.462e-2750.43Nuclear transport factor 2 OS=Candida glabrata GN=... [more]
NTF2_YEAST1.316e-2649.57Nuclear transport factor 2 OS=Saccharomyces cerevi... [more]
NTF2_SCHPO1.316e-2650.00Nuclear transport factor 2 OS=Schizosaccharomyces ... [more]
NTF2_DEBHA1.718e-2651.28Nuclear transport factor 2 OS=Debaryomyces hanseni... [more]
NTF2_CANAL1.455e-2549.57Nuclear transport factor 2 OS=Candida albicans GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_C05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936538 ID=CK936538; Name=CK936538; organism=Citrus sinensis; type=EST; length=780bp
GGGGGAAATCTGAGAGCGCTCTCTCTCTCTCTCTCTCTCTCGTTAGCGTG
AGTCTCAAGCGGAAACGGCAAACGCAAAATTCGAAAAGAGAGGCAGGGGT
AGGAGGGGATTTTGAAATTCAATCAGATGGATCCAGACTCAGTGGCTAAA
GCCTTCGTCGAGCACTACTACACGACGTTTGATGCCAATCGTACGGGGCT
CGCCAATCTCTATCAGGAAGGTTCCATGTTGACTTTTGAAGGTCAAAAAA
TCCAAGGCTCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCCTTCCAG
CAGTGCCAGCACTCCATCACCACCGTCGATTGCCAGCCCTCCGGTCCCGC
TGGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTGGTGAAC
AGCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACACCTCAG
GGAAGCTTTTATGTGTTGAATGACATATTAGGTTGAACTATGCATGAAGA
GAAGATTGATTGAAAAGGGGTGCAACTCCTGAAGGAGTGAAACATGTTTC
CTTATCTTTATTGAATTTTAAACATTTAAATGAACACTGGGTTTTTCTGT
GGTCGGTTATGTTTAAGGTTCCCTTGTGCCTTTCCTGAACTTTAAATAGA
GACATCTTTTCTGTGATTGGTTGAGTAACTGCAAGATCTCCCTGAAGAAG
TTGGGTCTTAGTGAAATGAATCAGAAATATTTGCGAAAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAANNNAAAAAAAAAA
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