CK936537

Overview
NameCK936537
Unique NameCK936537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig238 contig Csv1_Contig238:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 2.438e-93
Identity = 168/183 (91.80%), Postives = 173/183 (94.54%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RSLQNF+IGGERERMPEPIVRAFG+LKKCAAKVNMEYGLDP IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG KRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA E NSRLIP+LK LH++L SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQVKY
Sbjct:   56 RSLQNFEIGGERERMPEPIVRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGRKRGEKCVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHSTLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQVKY 238          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 2.064e-92
Identity = 166/183 (90.71%), Postives = 174/183 (95.08%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RSLQNF+IGG+RERMPEPIVRAFG+LKKCAAKVNMEYGLDP IG+AIM+AAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA E  SRLIP+LK LH+SL SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQV+Y
Sbjct:   63 RSLQNFEIGGDRERMPEPIVRAFGVLKKCAAKVNMEYGLDPMIGEAIMEAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAATEITSRLIPSLKNLHSSLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQVEY 245          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.391e-72
Identity = 133/184 (72.28%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA PLTLGQEFSGY  QVKY
Sbjct:   74 RSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKY 257          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 1.391e-72
Identity = 133/184 (72.28%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA PLTLGQEFSGY  QVKY
Sbjct:   74 RSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKY 257          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.177e-71
Identity = 131/184 (71.20%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN EYGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  ++KIGRTHTQDA PLTLGQEFSGY  QV+Y
Sbjct:   71 RSTMNFKIGGATERMPIPVIKAFGILKRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAALEVHQVLLPGLQKLHDALSAKSKEFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQY 254          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.538e-71
Identity = 132/184 (71.74%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  I+KIGRTHTQDA PLTLGQEFSGY  QVKY
Sbjct:   30 RSTMNFKIGGVTERMPIPVLKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALDAKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKY 213          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 2.008e-71
Identity = 131/184 (71.20%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP P+++AFGILK+ AA+VN EYGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG + G +K VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L+P L+ LH++L +KS EF  ++KIGRTHTQDA PLTLGQEFSGY  QV+Y
Sbjct:   71 RSTMNFKIGGATERMPIPVIQAFGILKRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHKVLLPGLQKLHDALSAKSKEFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQY 254          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.474e-71
Identity = 130/184 (70.65%), Postives = 150/184 (81.52%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RSLQNFDIGG  ERMPEP++RAFG+LKK AA VNM YGLDP +G+AI +AA EV +G L DHFPLVVWQTGSGTQ+ MN NEVI+NRA E+LG + G K  VHPNDHVN SQSSNDTFPT MH+AA +E + RLIP L  L ++L +KS EF+ I+KIGRTH QDATPLTLGQEFSGYT Q+ Y
Sbjct:   57 RSLQNFDIGGPTERMPEPLIRAFGVLKKAAATVNMTYGLDPKVGEAIQKAADEVIDGSLIDHFPLVVWQTGSGTQTKMNVNEVISNRAIELLGGELGSKAPVHPNDHVNMSQSSNDTFPTAMHVAAVVEIHGRLIPALTTLRDALQAKSAEFEHIIKIGRTHLQDATPLTLGQEFSGYTQQLTY 240          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.455e-69
Identity = 129/184 (70.11%), Postives = 149/184 (80.98%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RS  NF IGG  ERMP  ++RAFGILKK AA+VN +YGLDP I  AIM+AA EV  GKL+DHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG K G K  VHPNDHVN+SQSSNDTFPT MHIAAA E +  L+P L+ LH++L +K+ +FKDI+KIGRTHTQDA PL+LGQEF GY  QVKY
Sbjct:   73 RSTMNFRIGGVTERMPIQVIRAFGILKKAAAEVNKDYGLDPKIADAIMKAADEVESGKLDDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGKLGSKDPVHPNDHVNKSQSSNDTFPTAMHIAAAKEVHEVLLPGLQTLHDALAAKAEQFKDIIKIGRTHTQDAVPLSLGQEFGGYVQQVKY 256          
BLAST of CK936537 vs. ExPASy Swiss-Prot
Match: FUMH_SCHPO (Fumarate hydratase, mitochondrial OS=Schizosaccharomyces pombe GN=fum1 PE=2 SV=3)

HSP 1 Score: 260.381 bits (664), Expect = 4.188e-69
Identity = 129/184 (70.11%), Postives = 154/184 (83.70%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 549
            RSLQNF IGGE+ER+P P+VRAFG+LK+ AA VN E+GLDP +  AI QAAQEV +G+L+D+FPLVV+QTGSGTQSNMN+NEVIANRA EILG   G +K VHPNDHVN SQSSNDTFPTVMHIA+ ++ ++ L+P +K LH +L  K  EFK+I+KIGRTH QDATPL+LGQEFSGY TQV Y
Sbjct:   82 RSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREFGLDPKLADAIEQAAQEVIDGRLDDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGTLGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRALKGKEEEFKNIIKIGRTHMQDATPLSLGQEFSGYVTQVGY 265          
The following BLAST results are available for this feature:
BLAST of CK936537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUM1_ARATH2.438e-9391.80Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUM2_ARATH2.064e-9290.71Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUMH_MACFA1.391e-7272.28Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN1.391e-7272.28Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_RAT1.177e-7171.20Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_PIG1.538e-7171.74Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_MOUSE2.008e-7171.20Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_RHIOR4.474e-7170.65Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMH_DANRE2.455e-6970.11Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_SCHPO4.188e-6970.11Fumarate hydratase, mitochondrial OS=Schizosacchar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_C04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936537 ID=CK936537; Name=CK936537; organism=Citrus sinensis; type=EST; length=549bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTCAAGGATATTGTTAAAATTGGGCGCACTCACACTCAAGATGCGACACC
TTTGACTCTTGGGCAAGAATTTAGTGGCTATACTACACAAGTGAAGTAT
back to top