CK936534

Overview
NameCK936534
Unique NameCK936534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_DRANE (Apocytochrome f OS=Draba nemorosa GN=petA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_CITSI (Apocytochrome f OS=Citrus sinensis GN=petA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.400e-15
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_POPTR (Apocytochrome f OS=Populus trichocarpa GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_POPAL (Apocytochrome f OS=Populus alba GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_PLAOC (Apocytochrome f OS=Platanus occidentalis GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_PANGI (Apocytochrome f OS=Panax ginseng GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  279 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 320
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_OENPA (Apocytochrome f OS=Oenothera parviflora GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  277 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 318
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_OENGL (Apocytochrome f OS=Oenothera glazioviana GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  277 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 318
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_OENEH (Apocytochrome f OS=Oenothera elata subsp. hookeri GN=petA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  277 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 318
[Close]
BLAST of CK936534 vs. ExPASy Swiss-Prot
Match: CYF_OENBI (Apocytochrome f OS=Oenothera biennis GN=petA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:    3 VLQDPLRVQGLLFFLASVVLAQIFLVLKKKQFEKVQLSEMNF 128
            VLQDPLRVQGLLFFLASV+LAQIFLVLKKKQFEKVQLSEMNF
Sbjct:  277 VLQDPLRVQGLLFFLASVILAQIFLVLKKKQFEKVQLSEMNF 318
The following BLAST results are available for this feature:
BLAST of CK936534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CYF_DRANE5.400e-15100.00Apocytochrome f OS=Draba nemorosa GN=petA PE=3 SV=... [more]
CYF_CITSI5.400e-15100.00Apocytochrome f OS=Citrus sinensis GN=petA PE=3 SV... [more]
CYF_POPTR7.053e-1597.62Apocytochrome f OS=Populus trichocarpa GN=petA PE=... [more]
CYF_POPAL7.053e-1597.62Apocytochrome f OS=Populus alba GN=petA PE=3 SV=1[more]
CYF_PLAOC7.053e-1597.62Apocytochrome f OS=Platanus occidentalis GN=petA P... [more]
CYF_PANGI7.053e-1597.62Apocytochrome f OS=Panax ginseng GN=petA PE=3 SV=1[more]
CYF_OENPA7.053e-1597.62Apocytochrome f OS=Oenothera parviflora GN=petA PE... [more]
CYF_OENGL7.053e-1597.62Apocytochrome f OS=Oenothera glazioviana GN=petA P... [more]
CYF_OENEH7.053e-1597.62Apocytochrome f OS=Oenothera elata subsp. hookeri ... [more]
CYF_OENBI7.053e-1597.62Apocytochrome f OS=Oenothera biennis GN=petA PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_B12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936534 ID=CK936534; Name=CK936534; organism=Citrus sinensis; type=EST; length=801bp
GGGTACTTCAAGATCCATTACGTGTCCAAGGCCTTTTGTTCTTTTTGGCA
TCTGTTGTTTTGGCACAAATATTTTTGGTTCTTAAAAAGAAACAGTTTGA
GAAGGTTCAATTGTCCGAAATGAATTTCTAGATCCGCGGATTTATCAACA
TCAAGTTTGTAAAAAGAATCAAATTTTTCTTGGCAATTCTAATTATATTA
TGTAGGAGCACAAAACTTACGAAAAGCCTTTTGCTTATTTCGATTCTGTT
TCTACCGGATGTCGGGAATTTCTTGTACTGCATTCCTAAAGCACAGTATA
TATATTGTGAAGAAGACTATTGAACTTTCCCCCTTCTTTGTTTTTTCAAT
ACAAACTGGAGAATGTCACTATTACCATATTTAAATATCATAGAATGTGT
CAATAGTTTTCGATTCTATTAGACTAGAATCAAATTCGACTAGACCTAGA
TGCTAAACATAAGATAAGGAAGCGGAGAATATAGAATATAAAGAAAAAAA
AGGAAGGATAAATGAAGGGGAACAGGGGATTCTAAAGGGGATTATTCGTC
GTACTCGTCTTCGGCACCCGAAAGGGAATTTCCCACATCCCTTTCGGGTG
CCGAAATAATAAGGGTTCTTACTTCCATTCATCAAAGATTCCTATTCGTA
GTTTCGAATTTTTCCAGGTTTATCAGAACTCTTTTTGGATTTTTATTTTG
GATTTCTATTAAGTATTGGTAAAACAAAAAAAGAAATAGAAGTCATTGAA
CAAATGGCACTTCTTCCATGAACTTAGAAAACAATTTGAATTGATGAGAC
A
back to top