CK936526

Overview
NameCK936526
Unique NameCK936526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1933 contig Csv1_Contig1933:1..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936526 vs. ExPASy Swiss-Prot
Match: FTHC_SCHPO (Probable 5-formyltetrahydrofolate cyclo-ligase OS=Schizosaccharomyces pombe GN=SPBC1703.08c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 59/216 (27.31%), Postives = 97/216 (44.91%), Query Frame = 1
Query:  154 QKRILRSQVRKTLKFMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCPALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLF-VALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 792
            +K  LR+ +  +L  +   +   +  +I K V+E P +K  + +C Y++ P  +EV T  L+         D   K  K +++P+     SH M M+ +    + L  N   I EP        E   +M      +L ++PG+AFD           YYD ++ KYQ  A ++  R  +F V +    QI+    I    +D  +DALV+P  VI
Sbjct:    4 KKNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRCLI---------DVAFKEGKNVFIPKCI--GSHVMEMYQVFEKTESLTINKWGIAEP------NGESRKIMDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMFKVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201          
BLAST of CK936526 vs. ExPASy Swiss-Prot
Match: MTHFS_RABIT (5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 53/209 (25.36%), Postives = 103/209 (49.28%), Query Frame = 1
Query:  157 KRILRSQVRKTLKFMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCPALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALV 774
            KR LR+++++ L+ +    R      + + V+    ++ SQR+  ++S P   E++T +++  I Q           K  ++PR   +++HM M  ++S D++ +    S NI +P+  D     RE+ + A   +DL  +PGL FD           YYDT+L++      ++   +P  +AL++  QI  +  +  T  D+ VD ++
Sbjct:   10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEIIKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESDT----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQR----CLQQQGAKPYTIALAFREQICPQVPVDDT--DVSVDEVL 196          
The following BLAST results are available for this feature:
BLAST of CK936526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTHC_SCHPO1.420e-1127.31Probable 5-formyltetrahydrofolate cyclo-ligase OS=... [more]
MTHFS_RABIT7.049e-1125.365-formyltetrahydrofolate cyclo-ligase OS=Oryctolag... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004521_C10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936526 ID=CK936526; Name=CK936526; organism=Citrus sinensis; type=EST; length=867bp
GGGGACGACCCAANNNGCAATGCGCACACAAAACCAACAAAGTCACTCCT
CTCCACCTACCTTGCTGGTTGCTATTTTGTGGGCACGATGAGCCAGAGCA
ACGACAGCAGCAACCCTGAAGAAAAAGAACATGATCTGGAGTCCATTTTC
CAGCAAAAACGGATCCTTCGATCCCAAGTCCGAAAGACCCTCAAGTTCAT
GGACCCCTCGCTAAGATCCCATGAAGACAATGCAATTCAGAAAATTGTTT
TAGAAGCCCCGTGGTTTAAATCTAGTCAGAGACTATGTGCCTATATAAGT
TGCCCTGCTTTGAGAGAAGTTGATACATCAAAGTTGTTGTCTCAAATTCT
GCAAATTCCAAACGCAGATGGTGATACAAAGACAAGGAAGAAGCTCTATG
TGCCACGTGTGGAGGACAAGAATAGTCACATGCGCATGTTCCACATCTCA
AGTATTGATGATCTAATTGCAAACTCGATGAATATTTTAGAACCAGCTCC
AGTAGATGCTGATGGAAATGAACGAGAAGATGTAATGCAGGCAAATGAGC
CAGTGGATTTATTTCTCCTACCTGGACTTGCATTTGACAGGTCTGGGAGA
CGCTTGGGCCGTGGTGGAGGTTATTATGATACATTCCTGAAGAAGTACCA
AGAGCTTGCAAAGGAAAGAAATTGGAGGCAACCCCTCTTTGTTGCTCTGT
CATATTCTTTGCAGATCATGGATGAAGGAATCATATCAGCTACTCCAAAG
GACATGCCAGTTGATGCTCTTGTATCCCCGTCTGGTGTAATTCCCATTAG
TGCCGCTGCCTTAGACAGGATGCAATTTTGATGCTGGATTTCAACCAAAC
GTAAATGCTTTATTCAA
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