CX675147

Overview
NameCX675147
Unique NameCX675147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675147 vs. ExPASy Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.346e-52
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = -2 
Query:  372 SISSENATAAEISLSQEMLLIVGCWLGNEERIKTLISSSSSPDRIFGEQLSEQLVRDGGIQLPIFSEWWLAKEKFAVIDSFILSSFPGSTFQGCNGLSVKYQLPFSE-GLSVADVFGLLEQNRNRLGIAEYSISQSTLETIFNHFAANS 815
            SI+ + A+A+EISLS EM+  +  +LGNE+R+ TL+      D  F +QLSEQL RDGGI LPIF+EWWL KEKF+ +DSFI SSFPG+TF+ CNGLS+KYQLPF E GLS+AD FG LE+NRNRLGIAEYSISQSTLETIFNHFAANS
Sbjct: 1734 SITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLVPPLPEEDVRFDDQLSEQLFRDGGIPLPIFAEWWLTKEKFSALDSFIQSSFPGATFKSCNGLSIKYQLPFGEGGLSLADAFGHLERNRNRLGIAEYSISQSTLETIFNHFAANS 1882
The following BLAST results are available for this feature:
BLAST of CX675147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB1A_ARATH3.346e-5269.13ABC transporter A family member 1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_60B07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60B07-C14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675147 ID=CX675147; Name=CX675147; organism=Citrus sinensis; type=EST; length=816bp
CCCCCCCCCCCTTTTTGTCTGTCAACAACCTAGTTTCAACTTTTTGTACT
GGGACAAGAAACTTGTTACAATCTGTACACTTTTGTTTTGCCTCAGCTTT
AATGAATGAAGCATTTCTGCTAACGAGCTATATCAATGGCTCATCGCTTT
ATCAATCAAAATACAAGATACAACATCTAGGTCTGAATGATGCAAGTACT
TAAAAAATTGAATATTTATACATTGCATGCTTATTTTTTGATATTTACAA
ATCGTTTTGAAGACTATTTTGTTTTCTGTGGACACATATATCATCATCAC
CTGATCCCTCACAAATAAACGAGGATCAGGAAAATTTGAGGTATGGAAAA
AAAAAAGTGGACAAATTTTCATGAGTTAGCTGCAAAATGATTAAATATGG
TTTCCAACGTTGATTGGCTGATGCTGTATTCTGCAATTCCCAGTCGATTT
CTGTTCTGTTCTAAGAGCCCAAAGACGTCGGCAACTGAGAGACCTTCCGA
GAATGGTAGCTGATATTTGACACTCAACCCGTTGCACCCCTGAAATGTTG
AGCCAGGAAATGAAGATAAAATGAAAGAATCAATCACCGCAAACTTTTCT
TTGGCCAACCACCACTCGGAGAATATCGGCAATTGTATACCTCCATCTCG
AACCAACTGCTCAGACAATTGTTCCCCAAATATTCTATCAGGAGAAGAGG
AGGAACTTATAAGTGTTTTTATTCTTTCTTCATTGCCAAGCCAGCACCCA
ACTATAAGTAACATTTCCTGTGACAAGCTAATTTCTGCCGCCGTTGCATT
TTCTGATGAAATGGAG
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