EY665815

Overview
NameEY665815
Unique NameEY665815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8022 contig Csv1_Contig8022:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665815 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.358e-30
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  206 MGTGEENXXXXXXXXXXXXQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSM 487
            MGT E+             QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHPY+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM
Sbjct:    1 MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSM 93          
BLAST of EY665815 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.558e-18
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  206 MGTGEENXXXXXXXXXXXXQEIP-TTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMAT 493
            M  GEE             +E P TT  + D  SSMQA+YG GA P  F+ASTV SP+PHPY+W +QH  + PYG P+ Y A++ PGG++ HP + T
Sbjct:    1 MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYYG-GAAPAAFYASTVGSPSPHPYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPIVPT 96          
BLAST of EY665815 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.800e-16
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  275 TTPSYADWSSSMQAFYGAGATPPP-FFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMATVNQLY 508
            T P Y +W      F G  A PP  FF   VA+   HPY+WG QH ++PPYGTP P   +YPPG VYAHP+   V+  +
Sbjct:   29 TAPVYPEWPG----FQGYPAMPPHGFFPPPVAAGQAHPYMWGPQH-MVPPYGTPPPPYMMYPPGTVYAHPTAPGVHPFH 102          

HSP 2 Score: 33.113 bits (74), Expect = 2.800e-16
Identity = 25/78 (32.05%), Postives = 37/78 (47.44%), Query Frame = 1
Query:  574 APPFFPFYFVDSNSSTNKYRAGREGT*SKGPGFS*KIKGTPGGKAGEIEKATSGSGNDGVSQSAERGSDGSSDGNDEN 807
            AP   PF++    ++ N   AG +G     PG +        GK       TSG   +GV+ ++E GSD  S+G+D N
Sbjct:   95 APGVHPFHY-PMQTNGNLEPAGAQGA---APGAAETNGKNEPGK-------TSGPSANGVTSNSESGSDSESEGSDAN 161          
BLAST of EY665815 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  287 YADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSM 487
            Y DW++ MQA+YG     PP+F   VAS  +PHPY+WG   P+MPPYG  VPY A+Y  GGVYAHP +
Sbjct:   32 YPDWAA-MQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYG--VPYAALYAHGGVYAHPGV 96          
The following BLAST results are available for this feature:
BLAST of EY665815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GBF1_ARATH1.358e-3061.70G-box-binding factor 1 OS=Arabidopsis thaliana GN=... [more]
CPRF3_PETCR1.558e-1846.39Light-inducible protein CPRF3 OS=Petroselinum cris... [more]
HBP1A_WHEAT2.800e-1646.84Transcription factor HBP-1a OS=Triticum aestivum P... [more]
CPRF1_PETCR6.125e-1555.88Common plant regulatory factor 1 OS=Petroselinum c... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-H04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665815 ID=EY665815; Name=EY665815; organism=Citrus sinensis; type=EST; length=865bp
GCGCAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGTGCCATGAAA
GCAGGATGTCGTTTTGAATGCTCTGCTGCAGTTACCTACTTGTTTCTTCA
GCTATTGTTGAACCTTGGCTCTCTATTCATTTGGTGATTCATAGAGTCTA
CTTAGGAGACATCAAAAGTCAAATCATTAGGTCTTGAAGCTTTGAGATCA
ACTGGATGGGGACAGGGGAAGAGAACACTTCTGCTAAGACTGCCAAAACA
GCTTCTTCAACTCAGGAGATACCAACCACACCCTCGTACGCTGATTGGTC
CAGCTCTATGCAGGCTTTCTATGGTGCTGGGGCTACGCCACCTCCATTTT
TTGCTTCCACCGTTGCTTCTCCAACTCCTCATCCCTATCTGTGGGGAAGC
CAGCATCCTTTAATGCCACCATATGGCACCCCAGTTCCATACCAAGCTAT
ATATCCTCCAGGGGGAGTATATGCACATCCTAGCATGGCTACGGTAAATC
AATTATATTAAATTGTTTCAAGTTTTTCATTGTGTTCACATCCCTTTCTT
ATTACCAGGTTTCTTTGCAACTAGCACCTCCTTTTTTCCCATTTTATTTT
GTAGACTCCAACAGCAGCACCAACAAATACAGAGCCGGAAGGGAAGGGAC
CTGAAGCAAAGGACCGGGCTTCAGCTAAAAAATCAAGGGAACTCCAGGAG
GGAAGGCTGGAGAGATTGAAAAGGCNACTTCTGGTTCTGGGAATGACGGT
GTCTCTCAAAGTGCTGAAAGGGGTAGTGACGGGTCCTCTGATGGCAATGA
TGAAAATGGGAACCAGCAGGAGTTTGCTGGGGGTAAAAAAGGAAGCTTTG
ACCCAATGCTTTGAA
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