CX675125

Overview
NameCX675125
Unique NameCX675125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11277 contig Csv1_Contig11277:19..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_MOUSE (Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 75/147 (51.02%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 830
            K+YK  +R  LT KE +EL +EW PE L+PP+ +        + S    H I+ +GKE VNFAS N+LGL+ + ++  +  S+L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG ST+ SAIP + K+GD+I  D
Sbjct:   42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMKTEEAIIYSYGFSTVASAIPAYSKRGDIIFVD 188          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_CRIGR (Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 73/147 (49.66%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 830
            K+YK  +R  LT KE +EL +EW PE L+PP+ +        + S    H I+ +GKE VNFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG ST+ SAIP + K+GD++  D
Sbjct:   42 KTYKLQERSDLTAKEKEELIEEWQPEPLVPPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEERLAKFMRTEEAIIYSYGFSTIASAIPAYSKRGDIVFVD 188          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_BOVIN (Serine palmitoyltransferase 1 OS=Bos taurus GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 72/148 (48.65%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADE 833
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +NFAS N+LGL+ + +L  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D+
Sbjct:   42 KTYKLQERSDLTLKEKEELIEEWQPEPLVPPVSKDHPALNYNIVSGPPSHNIVVNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDK 189          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_HUMAN (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 71/147 (48.30%), Postives = 105/147 (71.43%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 830
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H T+++GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVD 188          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_MACFA (Serine palmitoyltransferase 1 OS=Macaca fascicularis GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.943e-34
Identity = 71/147 (48.30%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 830
            K+YK  +R  LT KE +EL +EW PE L+PP+ ++       + S    H I+ +GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVD 188          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_PONAB (Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.805e-33
Identity = 70/147 (47.62%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  396 KSYKPPKRP-LTKKEIDELCDEWVPESLIPPIIEEMQCEPPVLESAAGPHTII-SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD 830
            K+YK  +R  LT KE +EL +EW PE L+P + ++       + S    H I+ +GKE +NFAS N+LGL+ + ++  +  ++L+KYGVG+CGPRGFYGT DVHLD E R+AKF+ T ++I+YSYG +T+ SAIP + K+GD++  D
Sbjct:   42 KTYKLQERSDLTVKEKEELIEEWQPEPLVPLVPKDHPALNYNIVSGPPSHKIVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVD 188          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: SPTC1_DICDI (Serine palmitoyltransferase 1 OS=Dictyostelium discoideum GN=sptA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.051e-32
Identity = 70/153 (45.75%), Postives = 100/153 (65.36%), Query Frame = 3
Query:  390 SQKSYKPPKRP-LTKKEIDELCDEWVPESLIPPI--IEEMQCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGV 839
            +++ +KP +   LTK E DEL  EW P  L P    +E +     +++ + G H  I+ K+ +N A +NYLGLI + ++ +   +A+ KYGVGSCGPRGFYGTIDVHLD E + A F+ TP+++LYS   +T+ SAIP F K GD+I+ D GV
Sbjct:   41 TKRPFKPRQNDTLTKAEEDELIREWSPIPLTPKSNPLEVLNQTELIIQESEGTHVTINNKKYLNLARSNYLGLINNPEINKISENAIRKYGVGSCGPRGFYGTIDVHLDLEKKTASFMKTPEAVLYSSAYATISSAIPSFSKIGDIIIVDRGV 193          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: LCB1_SCHPO (Serine palmitoyltransferase 1 OS=Schizosaccharomyces pombe GN=lcb1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.262e-25
Identity = 59/143 (41.26%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  426 TKKEIDELCDEWVPESLIPPI--IEEMQCEP-PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHW 845
            T+KEI+EL D+W PE L+  +  +E+++ +  PVLES      +I G+ + NFAS N+L L  ++ + E   + L + G+G+CGP GFYGT D HL  E  IA F+G   +I+Y+    T+ S IP F K+GD++V DE  ++
Sbjct:   80 TEKEINELVDDWKPEPLVAELTDVEKLELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERAIVYAQSFQTISSVIPAFSKRGDILVVDEACNF 222          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: LCB1_YEAST (Serine palmitoyltransferase 1 OS=Saccharomyces cerevisiae GN=LCB1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 60/161 (37.27%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  393 QKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMQC-----EPPVLESAAGPHTIISGKE-------VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGV 839
            +KS +  K  L+ +EID L ++W PE L+ P   + Q       P  +E     H  I+          V N AS N+L L   E + E   + ++ YGVG+CGP GFYG  DVH   E  +A+F GT  S+LY        S +P F K+GD+IVAD+ V
Sbjct:   78 KKSLQAQKPNLSPQEIDALIEDWEPEPLVDPSATDEQSWRVAKTPVTMEMPIQNHITITRNNLQEKYTNVFNLASNNFLQLSATEPVKEVVKTTIKNYGVGACGPAGFYGNQDVHYTLEYDLAQFFGTQGSVLYGQDFCAAPSVLPAFTKRGDVIVADDQV 238          
BLAST of CX675125 vs. ExPASy Swiss-Prot
Match: BIKB_THEP3 (Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_0287 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  516 VLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVH 842
            VLES +GP +II GKEV+N +S NYLGL  H +L ++   A+EK+GVG+   R   G + +H + E ++A+F      + +  G +     I     KGD+I++DE  H
Sbjct:   28 VLESPSGPRSIIDGKEVINLSSNNYLGLANHPRLKKAAIEAIEKWGVGAGAVRTIIGNMTIHEELERKLAEFKREEAVLTFQSGFTANMGVIQAVVDKGDVIISDELNH 136          
The following BLAST results are available for this feature:
BLAST of CX675125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SPTC1_MOUSE1.345e-3551.02Serine palmitoyltransferase 1 OS=Mus musculus GN=S... [more]
SPTC1_CRIGR2.997e-3549.66Serine palmitoyltransferase 1 OS=Cricetulus griseu... [more]
SPTC1_BOVIN3.914e-3548.65Serine palmitoyltransferase 1 OS=Bos taurus GN=SPT... [more]
SPTC1_HUMAN5.112e-3548.30Serine palmitoyltransferase 1 OS=Homo sapiens GN=S... [more]
SPTC1_MACFA1.943e-3448.30Serine palmitoyltransferase 1 OS=Macaca fascicular... [more]
SPTC1_PONAB2.805e-3347.62Serine palmitoyltransferase 1 OS=Pongo abelii GN=S... [more]
SPTC1_DICDI4.051e-3245.75Serine palmitoyltransferase 1 OS=Dictyostelium dis... [more]
LCB1_SCHPO1.262e-2541.26Serine palmitoyltransferase 1 OS=Schizosaccharomyc... [more]
LCB1_YEAST1.886e-2137.27Serine palmitoyltransferase 1 OS=Saccharomyces cer... [more]
BIKB_THEP34.069e-1638.53Putative 8-amino-7-oxononanoate synthase/2-amino-3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60A02-A4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675125 ID=CX675125; Name=CX675125; organism=Citrus sinensis; type=EST; length=845bp
TGACAACTCTGTTCAACTAGTCAAAGCATTTTACATCTTCTCAATTGAGC
TCGAGTTCCAATCTGGTTCCTCTCTCTGTCATCGTTTAAGCATCTCCGAT
TTGCAATTCTTATCAAGCAAGGAGCAGGTGTCTGCGCCGAATATTGATTG
TACATTAGCTGAGGCAGTGTACTGATTTCTTCTTGACTGATGGTTGAAGC
CTCTCTGCTTGTCAAATTGCGATACTGAGTAGAATGGCATCTTTCATTTT
GAACTTCGTTAATACTATGCTAAATCGGGTGAAATTGGCCTTAGATTCTC
CTTCTGCCGGAGCGGTTGTTTTTGGAGTGCACATCAGCGGTCATTTATTC
GTGGAAGTTCTTCTTCTGGTGGTCATCCTTTTCCTACTTTCTCAAAAGAG
TTACAAGCCTCCTAAGCGACCGCTGACAAAGAAGGAAATAGATGAGCTAT
GTGATGAGTGGGTTCCAGAATCCCTTATTCCACCGATTATAGAAGAGATG
CAATGTGAGCCTCCAGTGCTGGAAAGTGCTGCAGGGCCGCATACAATAAT
TAGTGGAAAAGAAGTTGTGAATTTTGCTTCAGCAAATTATCTTGGATTGA
TAGGACATGAGAAATTACTTGAGTCATGTACCTCTGCATTGGAGAAATAT
GGTGTCGGCTCTTGTGGACCTCGTGGCTTCTATGGAACAATAGATGTTCA
CCTTGATTGTGAGGCCAGAATTGCTAAGTTTCTTGGAACTCCTGATTCAA
TCCTCTATTCTTATGGACTTTCCACCATGTTCAGTGCAATTCCCTGTTTC
TGCAAAAAAGGAGATCTCATTGTTGCTGATGAGGGAGTGCATTGG
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