CX675121

Overview
NameCX675121
Unique NameCX675121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:55..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675121 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.252e-43
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 2 
Query:   56 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 433
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CX675121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.252e-4366.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59H10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59H10-O19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675121 ID=CX675121; Name=CX675121; organism=Citrus sinensis; type=EST; length=732bp
TCTCAACTCAGGTTTTGTAGCTTTGCTGGAAATGGCAGAATCAAAATCAG
GATTGAGGAAACCAGTTTTTACCAAGGTTGATCAGCTACGCCCAGGTACT
AGTGGGCACACTCTCACAGTGAAGGTTGTGAGTACGAAGATGGTATTGCA
GAAGGGTCGTGGTGATGGAACACAAGTACGTCAGATGCGAATTGCTGAAT
GCTTGGTTGGTGATGAGACAGGAATGATTATCTTTACTGCTAGAAATGAT
CAAGTGGACCTGATGAAAGAGGGTACTACTGTGATTCTGCGCAATGCAAA
AATTGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAAGTGGGGCC
GTGTTGAAGTTGCAGAGCCTGCCAATTTCACCGTGAAGGAAGATAACAAC
CTCTCTCTGATTGAATATGAGCTTGTGAATGTTGTAGAAGAGTGAATTTC
TGGACAGTGTTCACTTACTCACTGCAATGTGACCCAAGAATAAAAAGAAA
TCCAGCATATCATAGTACTGTCGTTTATGCGGCATCTCCTGCCCAAAACT
GTGTTGCCTTTAGGAAGAAGAAATCTGGAAGCTATTACTACCCAAGATGC
TTTCTACCGTTGTGGCAGATCCAGTAGAACCTTTTGATTGGACCTCCNAA
CAGATGGTGATGGCTCTNAAGTTGATAAGTTAAAGCAGCTGGCATTTAGA
ACTGTCTTTGGTTTGTTTGCGACCTATTTATT
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