CK936383

Overview
NameCK936383
Unique NameCK936383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK936383 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 65/119 (54.62%), Postives = 77/119 (64.71%), Query Frame = 2 
Query:   56 DKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 412
            DKLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    5 DKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK936383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.662e-2854.62Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004383_A01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936383 ID=CK936383; Name=CK936383; organism=Citrus sinensis; type=EST; length=830bp
GGGGGAGGTTAAAGATCTTGAAACTAGCAGCTAAATTGTAAATTTAANNN
NNNNAGACAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGT
GGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGA
GGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAA
TGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCG
CTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAG
CAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACAC
ATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGG
AGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAAT
GTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGT
GTTGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCT
ATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCT
GACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCATATAATTTAAT
AATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTT
GCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTGTAAGAGCC
AAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATGTTTTATTATT
AATAAATAAGTTGCTTCTCTGAAAAAAAAA
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