CK936361

Overview
NameCK936361
Unique NameCK936361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_HUMAN (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.502e-52
Identity = 110/247 (44.53%), Postives = 147/247 (59.51%), Query Frame = 1
Query:  100 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            H KE ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA   PG+ +V+SPL +L+ +QV  L    I   +L+  +T    T IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V  K            + K +     I+YCL
Sbjct:  651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCL 896          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_XENLA (Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 107/247 (43.32%), Postives = 148/247 (59.92%), Query Frame = 1
Query:  100 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            H KE ++K+    FG  +FR  QL+AI A L G DCF LMPTGGGKS+CYQ+P    PG+ +V+SPL +L+ +QV  L    I   +L+  +T      IY  L    P ++LLYVTPE + A+   +S ++ ++ R LL    IDEAHC+S WGHDFRP Y++L+ LR     VP++ALTATA P+V+KD++  L +  P +   SFNR NL YEV  K            + K + +   I+YCL
Sbjct:  603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPNDSGIIYCL 848          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_CHICK (Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 113/271 (41.70%), Postives = 157/271 (57.93%), Query Frame = 1
Query:   55 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            ++++S+S+   + P HE+         E ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA    G+ +V+SPL +L+ +QV  LK   IA  +L+   T    +K Y  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++L+ LR     VP++ALTATA P+VQKD+   L +  P V   SFNR NL Y+V  K            + K +     I+YCL
Sbjct:  356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCL 626          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_MOUSE (Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 109/247 (44.13%), Postives = 146/247 (59.11%), Query Frame = 1
Query:  100 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            H KE ++K+    FG   FR  QL+AI A L G DCF LMPTGGGKS+CYQ+PA   PG+ +V+SPL +L+ +QV  L    I   +L+  +T      IY  L    P ++LLYVTPE + A+   +S L+ ++ R LL    IDEAHC+S WGHDFR  Y++++ LR   P VP++ALTATA P+VQKD++  L +  P V   SFNR NL Y V  K            + K +     I+YCL
Sbjct:  659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCL 904          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_CAEEL (Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.127e-50
Identity = 108/214 (50.47%), Postives = 139/214 (64.95%), Query Frame = 1
Query:  115 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 747
            L   L+  FG  QFR +Q   I + L G D F LMPTG GKS+CYQ+PA+  PG+ +VVSPL +L+E+Q + +KE GI  E L++      + KIY +L SG PS++LLYVTPE ++A+    S    +H RGLL    IDEAHC+S WGHDFRP Y KLSSLR     P VPI+ALTATA PK+  D  + L +QN  +  SSF R NL Y++
Sbjct:  235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDL 448          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: BLM_DROME (Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.246e-49
Identity = 104/238 (43.70%), Postives = 139/238 (58.40%), Query Frame = 1
Query:  127 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            L + FG   FR  QL  I A L G DCF LMPTGGGKS+CYQ+PA+   G+ +V+SPL +L+ +Q+  L    I  + LS  Q M     IY DL+S  P ++LLYVTPE ++++  F   L  ++S   ++   IDEAHC+S WGHDFRP Y+KL  L+   P+VP +ALTATA P+V+ D++  L L+N     SSFNR NL Y V  K            +         I+YCL
Sbjct:  729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGIIYCL 966          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: HUS2_SCHPO (ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe GN=rqh1 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 114/279 (40.86%), Postives = 164/279 (58.78%), Query Frame = 1
Query:   16 RILFVXKKMKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKSNGDTCAIVYCL 837
            R L    K K   + M S      + P  ++  ++  L+  F    FR  QL+AI   LSG+D F LMPTGGGKS+CYQ+PA+    A  G+ LV+SPL++LM++Q+  L++  I    LS  Q    + ++   L +    ++LLYVTPE  A+ G +++ LK ++ R LL  + IDEAHC+S WGHDFRP Y++L  LR+    +P +ALTATA   V+KD++ +L ++N L LKSSFNRPNLFYE++ K           S    +     I+YCL
Sbjct:  476 RPLLGEMKDKNHKVLMPSLDDPMLSYPWSKE--VLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPKKDLYTELYRFIS--NGHLHESGIIYCL 750          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: RECQ1_RAT (ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.799e-48
Identity = 95/212 (44.81%), Postives = 140/212 (66.04%), Query Frame = 1
Query:  124 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 756
            +LR  F   +FR  QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL   G  LV+ PLI+LME+Q++ L++ GI+   L+S+ + +    ++ ++ +    L+L+YVTPE  A +  FMS+L+K +  G L  VA+DE HC S WGHDFRP Y+ L  L+   P++ ++ LTATA   V KD  + LC++  L   +SFNRPNL+YEVR K
Sbjct:   82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQK 293          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: RECQ1_MOUSE (ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.234e-48
Identity = 94/203 (46.31%), Postives = 134/203 (66.01%), Query Frame = 1
Query:  151 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 756
            +FR  QL+ I   ++ +D F +MPTGGGKS+CYQ+PAL   G  LV+ PLI+LME+Q++ LK+ GI+   L+++ + +    ++ ++ +    L+L+YVTPE  A +  FMS+L+K +  G L  VA+DE HC S WGHDFRP Y+ L  L+   P+  ++ LTATA   V KDV + LC+   L   +SFNRPNLFYEVR K
Sbjct:   91 KFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQK 293          
BLAST of CK936361 vs. ExPASy Swiss-Prot
Match: RECQ_ECOLI (ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5)

HSP 1 Score: 187.578 bits (475), Expect = 7.558e-47
Identity = 99/212 (46.70%), Postives = 137/212 (64.62%), Query Frame = 1
Query:  121 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 756
            ++L+  FG+ QFR  Q + I  VLSGRDC  +MPTGGGKS+CYQIPAL   G+ +VVSPLI+LM++QV  L+  G+A   L+STQT + + ++     +G+  +RLLY+ PE      F+  L   +      L+A+DEAHCIS WGHDFRP Y  L  LR   P +P +ALTATA    ++D++  L L +PL+  SSF+RPN+ Y +  K
Sbjct:   15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK 220          
The following BLAST results are available for this feature:
BLAST of CK936361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
BLM_HUMAN3.502e-5244.53Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1... [more]
BLM_XENLA7.803e-5243.32Bloom syndrome protein homolog OS=Xenopus laevis G... [more]
BLM_CHICK7.803e-5241.70Bloom syndrome protein homolog (Fragment) OS=Gallu... [more]
BLM_MOUSE1.738e-5144.13Bloom syndrome protein homolog OS=Mus musculus GN=... [more]
BLM_CAEEL1.127e-5050.47Bloom syndrome protein homolog OS=Caenorhabditis e... [more]
BLM_DROME1.246e-4943.70Bloom syndrome protein homolog OS=Drosophila melan... [more]
HUS2_SCHPO1.377e-4840.86ATP-dependent DNA helicase hus2/rqh1 OS=Schizosacc... [more]
RECQ1_RAT1.799e-4844.81ATP-dependent DNA helicase Q1 OS=Rattus norvegicus... [more]
RECQ1_MOUSE5.234e-4846.31ATP-dependent DNA helicase Q1 OS=Mus musculus GN=R... [more]
RECQ_ECOLI7.558e-4746.70ATP-dependent DNA helicase recQ OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004383_D07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936361 ID=CK936361; Name=CK936361; organism=Citrus sinensis; type=EST; length=842bp
CGGGGAAGCAAAATTAGGATTTTATTCGTANNNAAAAAAATGAAGAAATC
ACCGTTGGCGATGCAAAGTACAAGTCAGACTCAGAAGAATAAGCCACTAC
ACGAAAAGGAAGCTCTCGTGAAGCTGTTGAGATGGCATTTTGGCCACGCT
CAGTTTAGGGACAAACAGCTTGACGCAATACAAGCTGTTTTATCAGGAAG
AGACTGCTTCTGTTTGATGCCAACTGGCGGTGGAAAGTCAATGTGTTATC
AAATTCCTGCATTGGCCAAACCTGGAATTGTACTTGTTGTTTCTCCTTTA
ATAGCTTTGATGGAAAATCAAGTCATTGGATTGAAGGAGAAAGGAATTGC
TGGTGAATTTCTCTCTTCAACTCAAACGATGCAAGTGAAAACTAAGATAT
ATGAAGACCTTGATTCTGGAAAACCATCCTTGAGGTTGCTATATGTAACA
CCAGAATTGACTGCAACACCTGGGTTTATGTCAAAGCTGAAGAAGATTCA
TTCGAGAGGGTTGTTGAACCTTGTGGCCATTGACGAGGCACATTGCATCT
CATCATGGGGCCATGATTTTAGGCCAAGCTACCGTAAGCTCTCATCTTTG
AGGAACTATCTTCCAGATGTTCCTATATTGGCATTGACAGCAACTGCTGC
TCCTAAAGTGCAGAAGGATGTTATGGAGTCCTTGTGCTTGCAGAATCCTT
TAGTCCTCAAATCTTCTTTCAATCGTCCTAATTTATTTTATGAAGTTCGA
TACAAAGATCTTTTGGATGATGCCTATGCCGATTTGTGTAGTGTACTCAA
GTCTAATGGAGATACCTGTGCAATTGTTTACTGTCTTGAACG
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