FC871928

Overview
NameFC871928
Unique NameFC871928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.880e-24
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEALNQRAVAVVVDPIQSVK  VVIDAFR INPQT+ML Q PR TTSNLGHLNKPSIQ+ IH
Sbjct:  128 TQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIH 193          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFE L  RAVAVVVDPIQSVK  VVIDAFRLINP T+M+ Q PR TTSNLGH+NKPSIQ+ IH
Sbjct:  128 TQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIH 193          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.601e-21
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEAL+ RAVAVVVDPIQSVK  VVIDAFR INPQ+M L Q PR TTSNLGHL KPSIQ+ IH
Sbjct:  131 TQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIH 196          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEAL++RAVAVVVDPIQSVK  VVIDAFRLINP  ++L Q PR TTSNLGHL KPS+Q+ IH
Sbjct:  127 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIH 192          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEAL++RAVAVVVDPIQSVK  VVIDAFRLIN   M+L   PR TTSNLGHLNKPSIQ+ IH
Sbjct:  129 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIH 194          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEAL++RAVAVVVDPIQSVK  VVIDAFRLIN   M+L   PR TTSNLGHLNKPSIQ+ IH
Sbjct:  129 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIH 194          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T +SFE LN RAVAVVVDPIQSVK  VVIDAFRLI+P T++  Q PR TTSN+G LNKP+IQS IH
Sbjct:  130 TQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIH 195          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.893e-16
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMML-----VQ*PRHTTSNLGHLNKPSIQSFIH 278
            T QSFEAL+ RAVAVVVDPIQSVK  V++DAFR +NP  + +        PR TTSNLGHL KPS+ S +H
Sbjct:  127 TQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVH 197          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T +SFE LN RAVAVVVDPIQSVK  VVIDAFRLI+   ++  Q PR TTSN G +NK +IQ+ IH
Sbjct:  125 TQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIH 190          
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.989e-15
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278
            T +SFE LN RAVAVVVDPIQSVK  VVIDAFRLI+   ++    PR TTSN G LNK +IQ+ IH
Sbjct:  125 TQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIH 190          
The following BLAST results are available for this feature:
BLAST of FC871928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSDE_ARATH5.880e-2484.8526S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO9.387e-2277.2726S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL1.601e-2178.7926S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME2.731e-2175.7626S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE6.085e-2177.2726S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN6.085e-2177.2726S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO5.695e-1972.7326S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
YPT5_CAEEL5.893e-1660.56Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
RPN11_CANGA1.715e-1565.1526S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_YEAST4.989e-1565.1526S proteasome regulatory subunit RPN11 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CG12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871928 ID=FC871928; Name=FC871928; organism=Citrus sinensis; type=EST; length=278bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTATATTAGTCACCCATCAAAGTTTTGAAGC
TTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGTGA
AAAGTAATGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCATG
ATGCTTGTTCAATAACCACGGCATACAACTTCCAATCTTGGTCATCTTAA
TAAGCCATCCATCCAATCATTTATCCAT
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