FC871928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.880e-24 Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEALNQRAVAVVVDPIQSVK VVIDAFR INPQT+ML Q PR TTSNLGHLNKPSIQ+ IH Sbjct: 128 TQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIH 193
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22 Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFE L RAVAVVVDPIQSVK VVIDAFRLINP T+M+ Q PR TTSNLGH+NKPSIQ+ IH Sbjct: 128 TQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIH 193
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.601e-21 Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEAL+ RAVAVVVDPIQSVK VVIDAFR INPQ+M L Q PR TTSNLGHL KPSIQ+ IH Sbjct: 131 TQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIH 196
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEAL++RAVAVVVDPIQSVK VVIDAFRLINP ++L Q PR TTSNLGHL KPS+Q+ IH Sbjct: 127 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIH 192
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21 Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEAL++RAVAVVVDPIQSVK VVIDAFRLIN M+L PR TTSNLGHLNKPSIQ+ IH Sbjct: 129 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIH 194
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21 Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEAL++RAVAVVVDPIQSVK VVIDAFRLIN M+L PR TTSNLGHLNKPSIQ+ IH Sbjct: 129 TQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIH 194
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19 Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T +SFE LN RAVAVVVDPIQSVK VVIDAFRLI+P T++ Q PR TTSN+G LNKP+IQS IH Sbjct: 130 TQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIH 195
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.893e-16 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMML-----VQ*PRHTTSNLGHLNKPSIQSFIH 278 T QSFEAL+ RAVAVVVDPIQSVK V++DAFR +NP + + PR TTSNLGHL KPS+ S +H Sbjct: 127 TQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVH 197
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.715e-15 Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T +SFE LN RAVAVVVDPIQSVK VVIDAFRLI+ ++ Q PR TTSN G +NK +IQ+ IH Sbjct: 125 TQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIH 190
BLAST of FC871928 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.989e-15 Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 3 Query: 81 THQSFEALNQRAVAVVVDPIQSVKSNVVIDAFRLINPQTMMLVQ*PRHTTSNLGHLNKPSIQSFIH 278 T +SFE LN RAVAVVVDPIQSVK VVIDAFRLI+ ++ PR TTSN G LNK +IQ+ IH Sbjct: 125 TQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIH 190 The following BLAST results are available for this feature:
BLAST of FC871928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871928 ID=FC871928; Name=FC871928; organism=Citrus sinensis; type=EST; length=278bpback to top |