CX044046 | Citrus Genome Database

Overview


Name	CX044046
Unique Name	CX044046
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	573

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.336e-28
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   93 EDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154

HSP 2 Score: 65.855 bits (159), Expect = 5.336e-28
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 1

Query:   55 MSLIPSIFGNR---SVFDPFSSDVWAP---LG---SSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIP IFG+R   SVFDPFS DV+ P   LG   S+S E S FA+ ++DWKET EAHVFK
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFK 61

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.947e-28
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKNDKW RVER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   93 EDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154

HSP 2 Score: 66.2402 bits (160), Expect = 6.947e-28
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1

Query:   55 MSLIPSIFGNR---SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIP IFG+R   S+FDPFS DV+ P       G++S E S FA+ ++DWKET EAHVFK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFK 61

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.053e-28
Identity = 38/62 (61.29%), Postives = 42/62 (67.74%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  GK VRRFRLPENAK+DQVKASMENGVL               +I I+G
Sbjct:   92 EDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

HSP 2 Score: 67.3958 bits (163), Expect = 9.053e-28
Identity = 38/60 (63.33%), Postives = 39/60 (65.00%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIPS FG R  SVFDPFS DVW P        S S E S F S +VDWKET EAHVFK
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFK 60

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.594e-27
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG*N 398
            ++KNDKWHRVER  GKF+RRFRLPENAK+++VKA+MENGVL               SI I+G N
Sbjct:   98 EEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISGAN 161

HSP 2 Score: 66.6254 bits (161), Expect = 2.594e-27
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPL------------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIPSIFG R  +VFDPFS D+W P              S++ +V+ F +A+VDWKET EAHVFK
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFK 66

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.732e-27
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKNDKWHR+ER  GKF+RRFRLPENAK+DQVKASMENGVL               SI+I+G
Sbjct:   93 EDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154

HSP 2 Score: 61.2326 bits (147), Expect = 5.732e-27
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1

Query:   55 MSLIPSIFGNR---SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIP IFG+R   S+FDPFS DV+ P        ++S E S FA+ ++DWKET E HVFK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFK 61

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.145e-26
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  G F+RRFRLPENAK++QVKASMENGVL               +I+I+G
Sbjct:   92 EDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153

HSP 2 Score: 64.3142 bits (155), Expect = 2.145e-26
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPLG------SSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIPSIFG R  +VFDPFS DVW P        S S E S F + +VDWKET EAHVF+
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFE 60

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.628e-26
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND+WHRVER  GKF+RRFRLPENAK+D+VKASMENGVL               SI+I+G
Sbjct:   97 EDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158

HSP 2 Score: 60.4622 bits (145), Expect = 3.628e-26
Identity = 35/65 (53.85%), Postives = 37/65 (56.92%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIPS F  R  +VFDPFS DVW PL            S   E   F S +VDWKET EAHVFK
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFK 65

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.628e-26
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND+WHR+ER  GKF+RRFRLPENAK+DQVKA+MENGVL               +I I+G
Sbjct:   97 EDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

HSP 2 Score: 63.1586 bits (152), Expect = 3.628e-26
Identity = 36/65 (55.38%), Postives = 38/65 (58.46%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIPS FG R  +VFDPFS DVW P             S   E S F S +VDWKET EAHVFK
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFK 65

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.632e-26
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  GKF RRFRLPENAK+++VKASMENGVL               +I+I+G
Sbjct:   93 EDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154

HSP 2 Score: 63.5438 bits (153), Expect = 3.632e-26
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETREAHVFK 210
            MSLIP  FG R  +VFDPFS D+W        P  S S E S F S +VDWKET EAHVFK
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFK 61

[Close]

BLAST of CX044046 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.719e-26
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 3

Query:  207 QDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 392
            +DKND WHRVER  GKF+RRFRLPENAK++QVKASMENGVL               +I+I+G
Sbjct:  100 EDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

HSP 2 Score: 61.2326 bits (147), Expect = 4.719e-26
Identity = 37/68 (54.41%), Postives = 41/68 (60.29%), Query Frame = 1

Query:   55 MSLIPSIFGNR--SVFDPFSSDVWAP---------LGSSS-----NEVSTFASAQVDWKETREAHVFK 210
            MSLIP+ FG R  +VFDPFS DVW P         L S+S      E S F S +VDWKET EAHVFK
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFK 68

The following BLAST results are available for this feature:

BLAST of CX044046 vs. ExPASy Swiss-Prot

BLAST of CX044046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35


Match Name	E-value	Identity	Description
HSP12_SOLPE	5.336e-28	62.90	17.6 kDa class I heat shock protein OS=Solanum per...	[more]
HSP11_SOLPE	6.947e-28	62.90	17.7 kDa class I heat shock protein OS=Solanum per...	[more]
HSP11_SOYBN	9.053e-28	61.29	17.3 kDa class I heat shock protein OS=Glycine max...	[more]
HS181_ARATH	2.594e-27	57.81	18.1 kDa class I heat shock protein OS=Arabidopsis...	[more]
HSP11_SOLLC	5.732e-27	62.90	17.8 kDa class I heat shock protein OS=Solanum lyc...	[more]
HSP13_SOYBN	2.145e-26	58.06	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP11_PEA	3.628e-26	61.29	18.1 kDa class I heat shock protein OS=Pisum sativ...	[more]
HSP12_MEDSA	3.628e-26	58.06	18.2 kDa class I heat shock protein OS=Medicago sa...	[more]
HSP14_SOYBN	3.632e-26	58.06	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP16_SOYBN	4.719e-26	59.68	18.5 kDa class I heat shock protein OS=Glycine max...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_15A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15A07-A13-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX044046 ID=CX044046; Name=CX044046; organism=Citrus sinensis; type=EST; length=573bp
GATAAATAAGCAAACGCTTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGC
AAAAATGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACC
CATTTTCCTCGGACGTCTGGGCGCCCCTTGGCTCCTCCAGCAACGAGGTG
TCAACATTCGCCAGTGCTCAAGTCGATTGGAAAGAAACCCGGGAAGCTCA
TGTTTTCAAGACAAGAACGACAAATGGCACCGTGTTGAGAGGGGCCGCGG
CAAGTTCGTGAGGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAG
TTAAGGCATCAATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTG
GAGGAGAAGAAGCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTC
TCCGTTAATTGCAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTT
AATGAACGATGTGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATG
TAATGTGTTGTCGACTGCTTTTTTAAGTAATAAAAATATGTTGTTTTCTT
GAAGGAGAAAAAAAAAAAAAAAA