EL492579

Overview
NameEL492579
Unique NameEL492579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length238
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:443..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.236e-22
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQLNPSAEDCGYG 228
            +SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGY +N+LQLN SAED GYG
Sbjct:  124 SSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYG 195          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.750e-21
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQLNPSAEDCGYG 228
            NSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG
Sbjct:  122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYG 193          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVN 186
            NSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG  +N
Sbjct:  122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.366e-17
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQLNPSAED 216
            ++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GY +  LQLNP+ E+
Sbjct:  124 STKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEE 191          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.153e-17
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQLNPSAED 216
            ++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GY +  LQLNP+ ED
Sbjct:  124 STKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQED 191          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.012e-15
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   13 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQL-NPS-AEDCGYG 228
            SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E    N  Q+ +PS     GYG
Sbjct:  121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYG 194          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.018e-13
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   16 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQL 198
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQV 185          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.018e-13
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   16 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYXVNTLQL 198
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQV 185          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.047e-12
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   10 NSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 165
            NSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +L
Sbjct:  121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKL 172          
BLAST of EL492579 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.047e-12
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query:   16 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 171
            KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E
Sbjct:  125 KELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEE 176          
The following BLAST results are available for this feature:
BLAST of EL492579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MTF1_PEA7.236e-2272.60MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_PETHY2.750e-2173.97Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL9_SOLLC1.668e-1879.66Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP3_ARATH5.366e-1763.77Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL9.153e-1763.77Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE1.012e-1562.16Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MADS7_ORYSJ8.018e-1357.38MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI8.018e-1357.38MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP1_ARATH1.047e-1267.31Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ1.047e-1267.31MADS-box transcription factor 8 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC3671 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3671, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492579 ID=EL492579; Name=EL492579; organism=Citrus sinensis; type=EST; length=238bp
TTGGCCTCTAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATAT
GTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCC
TTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACC
CTCAAACAAAGGTTGATGGAGGGATACCANGTGAACACACTTCAATTGAA
TCCTAGTGCAGAAGATTGTGGTTATGGGCTTACTCAGG
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