DY305479

Overview
NameDY305479
Unique NameDY305479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9955 contig Csv1_Contig9955:812..1474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305479 vs. ExPASy Swiss-Prot
Match: FK118_ARATH (F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 87/123 (70.73%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    4 KLVSCSGRLFMLSVSWC-EGDGQIGCRNKAVRKLWELDLTYLAWTEVSVHPDAPMDWNAAFVVDRNHIFGVEMFKIFGQVLDFLTVCDVSEKRMNWSHISRNHMAYELDATSCMTKSLAVLHL 369
            KLVSC+ RLFMLSVSWC EGDGQIG RNKAVRKLWELDL YL WTEVSVHPDAPMDWNA +V D+N + GVEMFKIFGQVL F TVCD+  +  +W H+SRN    +L+  SCM K++A+LHL
Sbjct:  442 KLVSCNHRLFMLSVSWCDEGDGQIGRRNKAVRKLWELDLVYLTWTEVSVHPDAPMDWNATYVSDQNILMGVEMFKIFGQVLSFFTVCDILTEEASWRHVSRNQRNQKLN-LSCMNKTIALLHL 563
[Close]
BLAST of DY305479 vs. ExPASy Swiss-Prot
Match: FK117_ARATH (F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.161e-45
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    4 KLVSCSGRLFMLSVSWC-EGDGQIGCRNKAVRKLWELDLTYLAWTEVSVHPDAPMDWNAAFVVDRNHIFGVEMFKIFGQVLDFLTVCDVSEKRMNWSHISRNHMAYELDATSCMTKSLAVLHL 369
            KLVSC+ RLFMLSVSWC EGDGQIG RNKAVRKLWELDL YL WTEVSVHPDAPMDWNA +V D+N + G+EMFKIFGQVL F TVCDV  +  +W H+SRN  + +L+  SC  K++A+LHL
Sbjct:  442 KLVSCNHRLFMLSVSWCDEGDGQIGRRNKAVRKLWELDLVYLTWTEVSVHPDAPMDWNATYVSDQNILMGIEMFKIFGQVLSFFTVCDVLTEEASWRHVSRNQRSQKLN-LSCTNKTIALLHL 563
The following BLAST results are available for this feature:
BLAST of DY305479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FK118_ARATH2.766e-4570.73F-box/kelch-repeat protein At5g42360 OS=Arabidopsi... [more]
FK117_ARATH6.161e-4569.92F-box/kelch-repeat protein At5g42350 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1AF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305479 ID=DY305479; Name=DY305479; organism=Citrus sinensis; type=EST; length=663bp
GCAAAACTTGTATCCTGTAGTGGTCGTCTATTCATGCTTTCTGTCTCCTG
GTGTGAAGGGGATGGTCAAATAGGCTGTAGAAACAAGGCAGTGAGAAAAT
TATGGGAGCTAGATCTCACGTACCTCGCCTGGACTGAGGTCTCTGTACAT
CCTGATGCTCCAATGGACTGGAATGCTGCATTTGTTGTGGACAGAAACCA
TATATTTGGTGTCGAAATGTTTAAGATATTTGGTCAGGTGCTGGACTTCT
TGACTGTATGTGACGTGTCGGAAAAGAGGATGAACTGGAGCCATATCTCA
AGAAATCACATGGCTTATGAACTGGATGCTACTTCATGCATGACTAAATC
ATTGGCTGTTTTACATCTGTAATCTTGTTGGCGTATGTGCTGATTCATGC
TGGAAATTTTAGGCTTGAACCTGCAAATTTCATTTCAAATTCTTTGGGTA
CAGTTGATTTGAACCTTTGCGCCTGCCTCTAGTTTCTGTATCTTATCCTG
GCTCATTTAAGAGGCATGTTTCACATGTAGCCATTTATGTACTCTCTTTG
CCACTGTTTATAAATTATTCATGTTTTTCAATCTTGTTTGTGTTGTCTTG
ACAAGGTGTAAAAGAGCTTATTGTTTATGTTAAATTGATAATGTGATATC
TGTTCTTCTCGTT
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