EY665797

Overview
NameEY665797
Unique NameEY665797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665797_ssr395 microsatellite EY665797_ssr395:395..406. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665797_ssr172 microsatellite EY665797_ssr172:172..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.163e-54
Identity = 92/123 (74.80%), Postives = 106/123 (86.18%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGI 595
            MASAT SVAK A++ NGKGFSEFSGLRNS+  LPF RKSSDDFHS++  QT+A+GSS    + +  +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+++AI+DTGGVKQASHLLKYDS LGI
Sbjct:    1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGI 123          

HSP 2 Score: 50.8322 bits (120), Expect = 1.163e-54
Identity = 32/77 (41.56%), Postives = 36/77 (46.75%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKGGLP 827
            F+ADVKPVGTDGIS DGK I+V S+R P N P                             G KK L   PGKG +P
Sbjct:  124 FDADVKPVGTDGISVDGKVIKVVSDRNPANLP-WKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIP 199          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.996e-49
Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 2
Query:  263 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGI 595
            S+LQ + KGFSEFSGLR S+++PFGRK++DD  SV+A QTS +G  +S  ++   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AI+DTGGVKQASHLLKYDS LGI
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGI 110          

HSP 2 Score: 52.373 bits (124), Expect = 2.996e-49
Identity = 33/77 (42.86%), Postives = 37/77 (48.05%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKGGLP 827
            F+ADVKPVGTDGIS DGK IQV S+R P N P                           + G KK L   PGKG +P
Sbjct:  111 FDADVKPVGTDGISVDGKVIQVVSDRNPVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 186          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 2.254e-46
Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLGI 595
            MAS T SV K        GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS  GYRK   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+I+AI+DTGGVKQASHLLKYDS LGI
Sbjct:    1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGI 114          

HSP 2 Score: 40.817 bits (94), Expect = 2.254e-46
Identity = 28/77 (36.36%), Postives = 32/77 (41.56%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKGGLP 827
            F+ADVKP G   IS DGK IQV SNR P   P                           + G KK +   PGKG +P
Sbjct:  115 FDADVKPSGETAISVDGKIIQVVSNRNPSLLP-WKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIP 190          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.871e-43
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            MAS  LS+A  +L+   KGFSEFSGL  S SLPFGRK SDD  + ++ QT+A+G   S    V  +AKLKVAINGFGRIGRNFLRCWHGRKDSPL++V I+DTGGVKQASHLLKYDS LG
Sbjct:    1 MASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILG 118          

HSP 2 Score: 39.2762 bits (90), Expect = 2.871e-43
Identity = 27/77 (35.06%), Postives = 32/77 (41.56%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKGGLP 827
            F+ADVK  G   IS DGK I+V S+R P N P                           + G KK L   PGKG +P
Sbjct:  120 FDADVKTAGDSAISVDGKVIKVVSDRNPVNLP-WGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIP 195          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.832e-42
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  233 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEIVAIDDTGGVKQASHLLKYDSPLGI 595
            MAS+ LS     LQ  G G SEFSGLR+SASLP  R + SDDF S ++ +T A+G+S  G R+   +AKLKVAINGFGRIGRNFLRCWHGR D SPL+++AI+DTGGVKQASHLLKYDS LGI
Sbjct:    1 MASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGI 121          

HSP 2 Score: 45.0542 bits (105), Expect = 1.832e-42
Identity = 29/77 (37.66%), Postives = 35/77 (45.45%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPPRXXXXXXXXXXXXXXXXXXXXXXXXTFKVGGKKDLYNPPGKGGLP 827
            F+ADVKPVG + IS DGK I+V S+R P N P                           + G KK L   PGKG +P
Sbjct:  122 FDADVKPVGDNAISVDGKVIKVVSDRNPSNLP-WGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 197          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.593e-30
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:  293 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            ++FSGLR+S S+ F R++S  FH VIA Q +   + ++  R     AKLKVAINGFGRIGRNFLRCWHGRKDSPL++V ++D+GGVK A+HLLKYDS LG
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILG 136          

HSP 2 Score: 31.5722 bits (70), Expect = 4.593e-30
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F+ADVK +  +  S DGK I+V SNR P   P
Sbjct:  138 FKADVKIIDNETFSIDGKPIKVVSNRDPLKLP 169          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.371e-29
Identity = 58/100 (58.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:  296 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            EFSGL++++ + +   + D  F+ V+A Q ++  + S+  + V   AKLKVAINGFGRIGRNFLRCWHGRKDSPLE++ ++D+GGVK ASHLLKYDS LG
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLG 137          

HSP 2 Score: 28.4906 bits (62), Expect = 8.371e-29
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F+A+VK +  + I+ DGK I+V S+R P   P
Sbjct:  139 FKAEVKILNNETITVDGKPIKVVSSRDPLKLP 170          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.375e-29
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  293 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            +EF+GLR+S  + F  K S  F  V++ Q +   + S+   K    AKLKVAINGFGRIGRNFLRCWHGRKDSPL++V ++D+GGVK ASHLLKYDS LG
Sbjct:    9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLG 106          

HSP 2 Score: 31.9574 bits (71), Expect = 8.375e-29
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F+ADVK V  + IS DGK I+V S+R P   P
Sbjct:  108 FKADVKIVDNETISVDGKHIKVVSSRDPLKLP 139          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.697e-27
Identity = 60/100 (60.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  293 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            +EFSGLR S+    G ++S  F   +A Q      ++S   +    AKLKVAINGFGRIGRNFLRCWHGRKDSPLE+V ++D+GGVK ASHLLKYDS LG
Sbjct:   39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLG 133          

HSP 2 Score: 31.5722 bits (70), Expect = 5.697e-27
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F+A+VK V  + IS DGK I+V SNR P   P
Sbjct:  135 FKAEVKIVDNETISVDGKLIKVVSNRDPLKLP 166          
BLAST of EY665797 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.017e-23
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  380 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEIVAIDDTGGVKQASHLLKYDSPLG 592
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L++VAI+D+GGVKQASHLLKYDS LG
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLG 89          

HSP 2 Score: 29.6462 bits (65), Expect = 2.017e-23
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 3
Query:  597 FEADVKPVGTDGISGDGKGIQVGSNRQPRNPP 692
            F ADVK V    IS DGK I++ S+R P   P
Sbjct:   91 FAADVKIVDDSHISVDGKQIKIVSSRDPLQLP 122          
The following BLAST results are available for this feature:
BLAST of EY665797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
G3PA_PEA1.163e-5474.80Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC2.996e-4971.17Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.254e-4673.17Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL2.871e-4368.33Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.832e-4266.67Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL4.593e-3062.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA8.371e-2958.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC8.375e-2960.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH5.697e-2760.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE2.017e-2364.56Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665797 ID=EY665797; Name=EY665797; organism=Citrus sinensis; type=EST; length=860bp
CCCACGCGGCCGCGCAACCATACATTCGAGTAAGAGGCTATCCAAAATCT
CATCCTCTCATTATCCTCAGCGTAATCCCAAAAGCAGCCACCAGATTCCC
TCCCTCCATCATCCGCCCCTATTACTCATTACTACTTGATCACATATAAC
ATTTTCGAGCATCTTGTCTTGGCTTAGCTTAGCTTAGCCACCACTGCTTG
CTCTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTC
TCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATT
CTCAGGTCTACGCAATTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTG
ATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGC
AGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAAT
CAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCC
GCAAGGACTCTCCACTTGAAATCGTTGCCATCGATGACACCGGAGGTGTC
AAGCAGGCCTCTCACCTCCTCAAGTACGACTCCCCCCTCGGCATTCTTTG
AAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGGTGATGGGAAG
GGCATCCAGGTTGGTTCTAACCGGCAACCCCGTAATCCCCCCCGGGGGGG
ACTTGGGGGCTTCACCTTGGGGATGAAGGGAAAGGGAGGGTTGTAACAAA
AAGGGGGGGCGGGAAAGACCTTTAAGGTGGGGGGAAAAAAAGACTTATAC
AACCCCCCCGGGAAGGGGGGACTTCCCCCCCCAGAGTTTATACTAGACGA
CACCGGGCGG
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