CX675088

Overview
NameCX675088
Unique NameCX675088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8486 contig Csv1_Contig8486:22..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTH1_CAEEL (Probable endonuclease III homolog OS=Caenorhabditis elegans GN=nth-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = -2
Query:  246 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELCPSA 500
            W    GI VDTH+H I NRLG +       KTS+ E+T++ L++ LPK EW PIN L VGFGQ  C P+RP+CG C     CPS+
Sbjct:  129 WGECVGIAVDTHVHRISNRLGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCRFTCPSS 206          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTHL1_BOVIN (Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 45/85 (52.94%), Postives = 51/85 (60.00%), Query Frame = -2
Query:  246 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELCPSA 500
            W  V GI VDTH+H I NRL        K+ T S E+TR  L+ WLP+E W  IN L VGFGQ  C PIRPRC  C    LCP+A
Sbjct:  223 WGTVSGIAVDTHVHRIANRLRWT-----KKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCLPIRPRCQACLNRALCPAA 302          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTHL1_HUMAN (Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.083e-17
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = -2
Query:  246 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELCPSA 500
            W  V GI VDTH+H I NRL        K+ T S E+TR  L+ WLP+E W  IN L VGFGQ  C P+ PRC  C    LCP+A
Sbjct:  230 WGTVSGIAVDTHVHRIANRLRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQALCPAA 309          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTH1_SCHPO (Endonuclease III homolog OS=Schizosaccharomyces pombe GN=nth1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.670e-17
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  243 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSE--LCPSAF 500
            WN   GI VD H+H ICN L   +       T + EQTR  LQ WLPKE W  +N   VGFGQTIC P   RC MC++S   LCPSAF
Sbjct:  152 WNKTVGIGVDVHVHRICNLLHWCN-------TKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICLPRGRRCDMCTLSSKGLCPSAF 232          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTHL1_MOUSE (Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.295e-16
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = -2
Query:  246 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELCPSA 500
            W  + GI VDTH+H I NRL        K+ T + E+TR+ L+ WLP+  W  +N L VGFGQ IC P+ PRC  C    LCP+A
Sbjct:  218 WGTISGIAVDTHVHRIANRLRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNKALCPAA 297          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTH1_ENCCU (Endonuclease III homolog OS=Encephalitozoon cuniculi GN=NTH1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = -2
Query:  246 NNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELCPSA 497
            N   GI VDTH+H I NR+G V       +T  +E TR  L+  +P++EW  IN + VGFGQTIC   RPRC  C +   CPS+
Sbjct:  160 NRTVGISVDTHVHRISNRIGLV-------RTRDVESTRRELERVVPRKEWKTINNILVGFGQTICVAKRPRCEECCIRGRCPSS 236          
BLAST of CX675088 vs. ExPASy Swiss-Prot
Match: NTG2_YEAST (DNA base excision repair N-glycosylase 2 OS=Saccharomyces cerevisiae GN=NTG2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = -2
Query:  255 WNNVQGICVDTHMHCICNRLGRVSQPGRKQKTSSLEQTREVLQLWLPKEEWVPINPLSVGFGQTICTPIRPRCGMCSVSELC 500
            W  + GICVD H+H +C     V       K  + E TR+ LQ+WLP   W  IN + VGFGQ IC     RC +C  +++C
Sbjct:  258 WGLIAGICVDVHVHRLCKMWNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLANDVC 335          
The following BLAST results are available for this feature:
BLAST of CX675088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NTH1_CAEEL6.004e-1850.59Probable endonuclease III homolog OS=Caenorhabditi... [more]
NTHL1_BOVIN7.842e-1852.94Endonuclease III-like protein 1 OS=Bos taurus GN=N... [more]
NTHL1_HUMAN5.083e-1750.59Endonuclease III-like protein 1 OS=Homo sapiens GN... [more]
NTH1_SCHPO8.670e-1752.27Endonuclease III homolog OS=Schizosaccharomyces po... [more]
NTHL1_MOUSE3.295e-1647.06Endonuclease III-like protein 1 OS=Mus musculus GN... [more]
NTH1_ENCCU2.361e-1446.43Endonuclease III homolog OS=Encephalitozoon cunicu... [more]
NTG2_YEAST3.770e-1240.24DNA base excision repair N-glycosylase 2 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59F11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F11-K21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675088 ID=CX675088; Name=CX675088; organism=Citrus sinensis; type=EST; length=501bp
TTGAAGACCAATAATATCCTTCTATCACACTCCGCAAGCATTTGATACAA
GTTTGCAAAACGAGACCATTGACCTTGAAATGATATTACACCAATTCCCT
ATGACCAAAATACACAAGGAAGCCATCTATCATATGTATATTGCTCAATA
ACCCTACTGTGTTAATTTGGAGGGTAAAATGAGCAGCATAGCTATTTCTG
AGCGGACTTCTTCGACTTAGATGATGGACTGGAGCTCTCCTTGAATGCGG
AAGGGCAGAGCTCGCTCACACTGCACATCCCGCAGCGAGGTCTGATTGGG
GTACATATTGTTTGTCCAAATCCCACCGAGAGAGGGTTAATGGGAACCCA
TTCCTCCTTCGGAAGCCAAAGTTGCAGCACTTCTCTTGTTTGCTCTAGGG
ATGAAGTTTTCTGTTTTCTGCCTGGCTGAGATACCCGTCCAAGGCGATTG
CATATACAATGCATATGAGTATCTACACATATCCCCTGAACATTGTTCCA
T
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