CX675079

Overview
NameCX675079
Unique NameCX675079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_ARATH (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.017e-89
Identity = 151/213 (70.89%), Postives = 180/213 (84.51%), Query Frame = 3
Query:   21 ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            E +PLSQR EWSDV P+ QDDGPNPVVPIAYK EF ETM YFRA+Y+SDERS R+ +LT+E + LN GNYTVWHFRR ++E L+ DL +EL F  RIA  NS NYQLWHHRRWVAEKLG     +EL+FT+++LSLDAK+YHAWS+RQW L+ALGGWEDELDYC  LL  D+FNNSAWNQRY+V+T+SPLLGGL+AMR+SEV++TI+AIL NP
Sbjct:   19 ETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLTEETLLLNSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWNQRYYVITQSPLLGGLEAMRESEVSYTIKAILTNP 231          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_PEA (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 8.949e-89
Identity = 155/216 (71.76%), Postives = 177/216 (81.94%), Query Frame = 3
Query:   12 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            +E +R+PL  RPEWSDVTPIPQDDGP+PVVPI Y  EFSE M YFRAVY++ E SSR+  LT EAI LN GNYTVWHFRR ++E+L  DL  E  F  R+A  NS NYQ+WHHRRWVAEKLG  A N EL+FTKK+LS+DAK+YHAWS+RQWVLQ LGGWEDEL YC  LL EDIFNNSAWNQRYFV+TRSP+LGGLKAMR+SEV FT+EAI+  P
Sbjct:    8 EEDDRVPLRLRPEWSDVTPIPQDDGPSPVVPINYSEEFSEVMDYFRAVYFAKELSSRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVEREFVERVASGNSKNYQIWHHRRWVAEKLGPEARNSELEFTKKILSVDAKHYHAWSHRQWVLQNLGGWEDELSYCSELLAEDIFNNSAWNQRYFVITRSPVLGGLKAMRESEVLFTVEAIISYP 223          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_SOLLC (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.526e-88
Identity = 150/212 (70.75%), Postives = 177/212 (83.49%), Query Frame = 3
Query:   24 RLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            R+P  +RP+W+DV P+PQDDGP PVVPIAY  +FSETM YFRA+Y +DERS+R+ QLT EAI LNPGNYTVW FRR ++E L  DL++EL F  RIA  N+ NYQ+WHHRRW+AEKLG  AV  EL+FTKK+ S DAKNYHAWS+RQWVLQALGGWEDEL YCQ LL +DI+NNSAWNQRYFVVTRSPLLGGL AMR+ EVN+T++AI  +P
Sbjct:   10 RIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALGGWEDELAYCQQLLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASP 221          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_BOVIN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.594e-53
Identity = 100/202 (49.50%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   42 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAI 644
            RPEW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN  NYTVWHFRR ++++L  DL +E+ +   I      NYQ+WHHRR + E L     ++EL+F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ +      +A+ + EV +T+E I
Sbjct:   65 RPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND-RAILEREVQYTLEMI 263          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_MOUSE (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 100/202 (49.50%), Postives = 136/202 (67.33%), Query Frame = 3
Query:   42 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAI 644
            R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN  NYTVWHFRR ++ +L  DLQ+E+ +   I      NYQ+WHHRR + E L     ++EL+F   +LS DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ +      +A+ + EV +T+E I
Sbjct:   69 RAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKD--PSQELEFIADILSQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSD-RAVLEREVQYTLEMI 267          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_HUMAN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.007e-52
Identity = 99/202 (49.01%), Postives = 136/202 (67.33%), Query Frame = 3
Query:   42 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAI 644
            R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN  NYTVWHFRR ++++L  DL +E+ +   I      NYQ+WHHRR + E L     ++EL+F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQRYFV++ +      +A+ + EV +T+E I
Sbjct:   69 RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND-RAVLEREVQYTLEMI 267          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_RAT (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.545e-51
Identity = 98/202 (48.51%), Postives = 136/202 (67.33%), Query Frame = 3
Query:   42 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAI 644
            R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   DERS R+F+LT++AI LN  NYTVWHFRR ++ +L  DLQ+E+ +   I      NYQ+WHHRR + E L     ++EL+F   +L+ DAKNYHAW +RQWV+Q    W++EL Y   LL ED+ NNS WNQR+FV++ +      +A+ + EV +T+E I
Sbjct:   69 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSD-RAVLEREVQYTLEMI 267          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_DICDI (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 92/217 (42.40%), Postives = 131/217 (60.37%), Query Frame = 3
Query:   27 LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII------ETLHTDLQDEL-AFGRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            +P S+RPEWSDV P+ QDDGP+P+ PI Y   F + M+YFRA+  S E+S R   L +E I  NP NYT+W++RR+++      ET+  D+Q E+     +  ++  NYQ+W+HRR++ EK   G+ NKE +F   +L  DAKNYHAWS+RQW+L+    W  EL     LL  D  NNS WN R+FV++         ++ + EV F    I  +P
Sbjct:   11 VPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFIVEKY-IGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLLKTYRDWNGELAMVDKLLSLDHRNNSVWNHRFFVISNLNPSPFPLSLIEREVEFAFNHIRHSP 226          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_SCHPO (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Schizosaccharomyces pombe GN=cwp1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 83/204 (40.69%), Postives = 119/204 (58.33%), Query Frame = 3
Query:   48 EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            E+  +TPIPQDDG NP+  I Y   + + M+YFRA+    E S R+  LT   I  NP +YTVW +R QI+    + + +EL +   IA     NYQ+WHHR+ +     T    +EL+FTKKM  +D+KNYH WSYR W+LQ    +  EL     LL +DI+NNSAWN R++V+  +  +  +    + E+N+  + IL  P
Sbjct:   16 EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSL--TKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVLFETSKV--VSWSLEEELNYLKDKILFAP 215          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_YEAST (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Saccharomyces cerevisiae GN=RAM2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.133e-25
Identity = 59/182 (32.42%), Postives = 98/182 (53.85%), Query Frame = 3
Query:   48 EWSDVTPIP-QDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF--------GRIAXSNSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQILLGEDIFNNSAWNQRYF 566
            ++SDV P+P + D  + +  I Y  ++   M   RA+   +E S R+ QLT E I + P  YT+W++R  I+  + ++ +D + +          +  +N  NYQ+W +R+ + +   + +  +EL   K M+  D+KNYH WSYR+W       ++ EL Y   L+  DI+NNSAW  R F
Sbjct:    5 DYSDVKPLPIETDLQDELCRIMYTEDYKRLMGLARALISLNELSPRALQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESEDTVLYLNKELDWLDEVTLNNPKNYQIWSYRQSLLKLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQHELAYASDLIETDIYNNSAWTHRMF 186          
The following BLAST results are available for this feature:
BLAST of CX675079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FNTA_ARATH4.017e-8970.89Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_PEA8.949e-8971.76Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SOLLC1.526e-8870.75Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_BOVIN1.594e-5349.50Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_MOUSE1.763e-5249.50Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_HUMAN3.007e-5249.01Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_RAT2.545e-5148.51Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_DICDI5.492e-4642.40Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SCHPO1.449e-3840.69Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_YEAST3.133e-2532.42Protein farnesyltransferase/geranylgeranyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F04-K7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675079 ID=CX675079; Name=CX675079; organism=Citrus sinensis; type=EST; length=658bp
ACGAGCAGCAGCAGGAGGCGGAGAGATTGCCACTGAGTCAAAGACCCGAG
TGGTCTGACGTCACTCCAATACCACAAGACGATGGCCCGAATCCAGTGGT
CCCGATCGCATACAAACCAGAATTCAGCGAAACCATGAGCTACTTCCGCG
CCGTCTATTACTCCGACGAGCGATCGTCTCGCTCCTTTCAACTCACCAAA
GAAGCCATCTGCCTTAACCCCGGAAACTACACTGTATGGCATTTCAGGCG
CCAAATAATTGAGACGCTTCATACCGACCTGCAAGATGAACTGGCTTTTG
GCCGCATTGCCNAGAGTAACTCCNAAAATTATCAGTTATGGCATCATAGA
AGGTGGGTTGCTGAGAAATTGGGAACTGGTGCTGTGAACAAGGAACTTCA
GTTCACCAAGAAGATGCTTTCTCTTGATGCTAAAAATTATCATGCCTGGT
CCTATAGGCAGTGGGTACTTCAGGCATTAGGAGGGTGGGAAGATGAGCTT
GACTATTGTCAGATACTCCTTGGAGAAGATATATTTAATAATTCTGCATG
GAATCAGAGATACTTTGTAGTAACCAGATCTCCCTTACTTGGAGGCCTAA
AAGCAATGAGAGATTCTGAAGTTAATTTTACCATTGAAGCAATTTTGGGT
AACCCTGA
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