EL492575 | Citrus Genome Database

Overview


Name	EL492575
Unique Name	EL492575
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	393

Libraries


Library Name	Type
Citrus sinensis flesh cDNA-AFLP Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1297	contig	Csv1_Contig1297:256..644.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_BOVIN (Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 45/115 (39.13%), Postives = 61/115 (53.04%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  +        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N+F DT  F     W     W  PSF+L
Sbjct:   49 LPPVSGTADVFFRQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTASSFWLMPSFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_RAT (Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  Q        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFQQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_MOUSE (Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  Q        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFQQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_PONAB (Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  +        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N+F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFRQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_MACFA (Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  +        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N+F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFRQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_HUMAN (Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V  +        G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+  N+F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFRQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_XENLA (Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTA+V           G    + L + V W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV+SL+  N+F DT  F     W     W  P+F+L
Sbjct:   49 LPPVSGTADVFFHQILALTGWGYRV-IALQYPVYWDHLEFCDGFRKLLDDLHLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNSFSDTSIF--NQTWTANSFWLMPAFML 160

[Close]

BLAST of EL492575 vs. ExPASy Swiss-Prot
Match: SPG21_DANRE (Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 3

Query:   54 LPGTAGTAEVLLQADHGFVHEGLPGDLLLIFHVLWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVXSNTFLDTHSFAAAMPWAPIVSW-TPSFLL 389
            LP  +GTAEV  Q        G    + L + V W+  E+   F K LD + +  +HL+G SLGGFLAQ FA+  ++  RV SLV  N+F DT  F     W     W  PSF+L
Sbjct:   49 LPPVSGTAEVFFQQVLALSGWGYRV-ISLQYPVYWDLLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEVTYKSPRVHSLVLCNSFSDTSIF--NQTWTANSFWLMPSFML 160

The following BLAST results are available for this feature:

BLAST of EL492575 vs. ExPASy Swiss-Prot

BLAST of EL492575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
SPG21_BOVIN	1.041e-12	39.13	Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1	[more]
SPG21_RAT	1.359e-12	39.13	Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1	[more]
SPG21_MOUSE	1.359e-12	39.13	Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1	[more]
SPG21_PONAB	3.028e-12	38.26	Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1	[more]
SPG21_MACFA	3.028e-12	38.26	Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=...	[more]
SPG21_HUMAN	3.028e-12	38.26	Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1	[more]
SPG21_XENLA	3.955e-12	38.26	Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1	[more]
SPG21_DANRE	3.348e-11	40.00	Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1	[more]

Properties


Property Name	Value
Genbank description	C3580 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3580, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EL492575 ID=EL492575; Name=EL492575; organism=Citrus sinensis; type=EST; length=393bp
CAGTGGCGATATGTATGATTTTGGCCCAAAAGTAGTTCCTCCACTTATCT
TGTCTTCCTGGAACGGCAGGGACAGCAGAAGTGCTACTACAAGCAGATCA
TGGCTTTGTCCATGAAGGGTTACCGGGTGATTTACTGTTGATATTCCACG
TGCTATGGAATCATCATGAGTGGATTCAAGCATTTGAAAAATTCCTTGAT
GCCATTGATGTTCATCATATACACCTTTACGGCACATCACTTGGAGGCTT
CCTAGCACAACTTTTTGCTCAGCATCGCCCAAGACGAGTTAGATCATTAG
TCNTATCAAATACATTTTTGGATACGCATAGTTTCGCAGCTGCAATGCCA
TGGGCTCCCATTGTTAGTTGGACACCTTCTTTTTTGCTTACTA