EL492573 | Citrus Genome Database

Overview


Name	EL492573
Unique Name	EL492573
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	437

Libraries


Library Name	Type
Citrus sinensis flesh cDNA-AFLP Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EL492573 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.220e-30
Identity = 68/76 (89.47%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  114 MXIFVKTLTGKTITLEVESSDTIDXVKAXIQDXEXIPPDXXRLIFAGKQLEDGRNLADYNIQKESTLHLVLRLRGG 341
            M IFVKTLTGKTITLEVESSDTID VKA IQD E IPPD  RLIFAGKQLEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EL492573 vs. ExPASy Swiss-Prot

BLAST of EL492573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.220e-30	89.47	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.220e-30	89.47	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.220e-30	89.47	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.220e-30	89.47	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.220e-30	89.47	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.220e-30	89.47	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.220e-30	89.47	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.220e-30	89.47	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.220e-30	89.47	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.220e-30	89.47	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C3560 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3560, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EL492573 ID=EL492573; Name=EL492573; organism=Citrus sinensis; type=EST; length=437bp
GCAGCGCCTGATCTTTGCTGGGTAAGCAGCTGGAGGATGGAAGGACGCTT
GCGGATTACAACATTACAGAAGGAGTCGACTCTTCATCTGGTGTTGCGCT
CTGAGTGGGCGGTATGCANATTTTCGTCAAGACTCTTACTGGGAAAACAA
TTACCCTGGAGGTGGAGAGTTCTGATACCATTGACANTGTCAAGGCTAAN
ATTCAGGATAANGAANGGATTCCACCTGATCANCANAGGCTCATCTTTGC
TGGGAAGCAGCTTGAGGATGGCCGTAATTTAGCTGATTATAACATTCAAA
AGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGTCAATTCTGA
GCTATTTTGAGTTCTGTCTGTGTTTGTCTGCTCACAGCAAGATTTTAGTA
TTTGCTTATTGTTATAACGGTCGTTCTCTTACTCAGG