CX675065

Overview
NameCX675065
Unique NameCX675065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1572 contig Csv1_Contig1572:597..1261. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675065 vs. ExPASy Swiss-Prot
Match: SNAG_ARATH (Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.058e-44
Identity = 82/108 (75.93%), Postives = 102/108 (94.44%), Query Frame = -2 
Query:  338 TFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSSTISNLDHVIIKLARKLPTGDVSALK 661
            TF LR G+AADKC+ATNSQCKAYLSAII+YLYA+D +QAEKCYNDCSQ+DAFL+SDQ+R A++L++AY EGD+EEIK+VA +ST+SNLDH+IIKLARKLPTGDV+A++
Sbjct:  171 TFFLRLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEGDIEEIKKVASASTVSNLDHMIIKLARKLPTGDVTAIQ 278
The following BLAST results are available for this feature:
BLAST of CX675065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SNAG_ARATH3.058e-4475.93Gamma-soluble NSF attachment protein OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59E09-I17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675065 ID=CX675065; Name=CX675065; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAACGTAATATTCCTCCGAATCCTTGTCATTTTA
CTTAAAATTGTTAGTTAAAAACCTTACAACGGAAAACCTGAACAAACTTG
AAGAATTTGCACATTTAACACGACAAAACTAGCAACTAAATATTAATGTT
TACATCAAGGCGACAAACGCAAACAAGCTTACCATAACATCCGCCAGTGC
AATTTTCTGGTTCTATTCTGCGGTATAAACACACCAAAGCTCACTCATTT
ATGGAACAAACATTTTCAATTATACAAAGAGAAACTATGTGAGATCGTTT
TCATCCAGTGGTTCTTCATCTTGAACGGCATTAGCTTTTTCAGTGCACTA
ACATCTCCTGTTGGCAGCTTTCGTGCAAGCTTGATTATCACATGATCAAG
ATTTGAAATAGTGCTCGATTGAGCCACACGCTTAATTTCTTCAACGTCAC
CTTCAGTGTAGGCAGAAATAAGTTTAGTAGCACAGCGATTCTGGTCACTT
CTCAAAAAAGCATCAACCTGGGAACAGTCATTGTAGCATTTCTCTGCTTG
CTTGAAGTCATTAGCATAAAGATACACAATAATTGCACTAAGATATGCCT
TGCACTGGCTGTTGGTAGCATTGCACTTATCAGCTGCCAAACCCCATCTC
AACAGAAAAGTGCCT
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