CX675064
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.371e-15 Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 402 Y AC CNKKV D GS + CE C K + RYI+ V D +G+ W+++F++ + I+ +ADELN+L Q D+N++ + E ++P++ + Q + E R R TV ++ +D+ ESK L+ I Sbjct: 474 YPACPAADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFI 605
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14 Identity = 39/137 (28.47%), Postives = 76/137 (55.47%), Query Frame = 1 Query: 4 YRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y AC + CNKKV + + CE C N+ + RYI+ + D + + W+++F+++A++++G A+ L LK + D N + + + + R+ + YN++ R R TV + +++ AE+ +L +E+SK Sbjct: 483 YPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14 Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 414 Y+AC T CNKKV D Y CE C + R I+ A + D W++ F E AE I+G + L ELK + ++ +++ + + R+ V + YN+E R + TV V PVDF + L+ I K + Sbjct: 487 YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKNM 623
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14 Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC + CNKKV D + CE C K R I+ A + D WI+ F E AE I+G +A L ELK + ++ +Y + + + R+ V + YN+E R + T V PVD S+ L+ I K Sbjct: 469 YQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13 Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC + CNKKV D + CE C K R I+ A + D WI+ F E AE I+G +A L ELK + ++ +Y + + + R V + YN+E R + T V PVD S+ L+ I K Sbjct: 469 YQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13 Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC T CNKKV D Y CE C R I+ + D W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+E R + TV V PVD+ + L+ I + Sbjct: 478 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13 Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC T CNKKV D Y CE C R I+ + D W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+E R + TV V PVD+ + L+ I + Sbjct: 478 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12 Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC + CNKKV D Y CE C + R +++ + D W++ F E AE I+G SA L ELK + ++ +++ + + + ++ V + YN+E R + T V PV++ SK L+ I + Sbjct: 475 YQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12 Identity = 42/137 (30.66%), Postives = 67/137 (48.91%), Query Frame = 1 Query: 4 YRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408 Y+AC K CNKKV D + CE C K + R ++ A + D W++ F + AE ++G ++ L +LK ++ ++ + + + R V + YN+E R +VTV PVD SK L+ I K Sbjct: 463 YQACPSKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDT--NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_CAEEL (Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12 Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1 Query: 4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD 366 YR C + C KK+ G Y CE C KN + Y+M + D +G+ +++ F + A +I+G SA EL EL + D+ Y + + +VP + R+ YN E RQ++TV V V+ Sbjct: 515 YRGCASEGCQKKLVGENGD-YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVN 634 The following BLAST results are available for this feature:
BLAST of CX675064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675064 ID=CX675064; Name=CX675064; organism=Citrus sinensis; type=EST; length=585bpback to top |