CX675064

Overview
NameCX675064
Unique NameCX675064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.371e-15
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 402
            Y AC    CNKKV D  GS + CE C K  +    RYI+   V D +G+ W+++F++  + I+  +ADELN+L  Q  D+N++   + E  ++P++ +    Q  +  E R R TV ++  +D+  ESK L+  I
Sbjct:  474 YPACPAADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFI 605          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.516e-14
Identity = 39/137 (28.47%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    4 YRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y AC  + CNKKV +     + CE C  N+   + RYI+   + D + + W+++F+++A++++G  A+ L  LK +  D N +    + +    +  R+   +  YN++ R R TV  +  +++ AE+ +L +E+SK
Sbjct:  483 YPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 414
            Y+AC T  CNKKV D     Y CE C +       R I+ A + D     W++ F E AE I+G +   L ELK +  ++ +++   +   +     R+ V  + YN+E R + TV  V PVDF    + L+  I K +
Sbjct:  487 YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKNM 623          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.411e-14
Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC +  CNKKV D     + CE C K       R I+ A + D     WI+ F E AE I+G +A  L ELK +  ++ +Y    +   +  +  R+ V  + YN+E R + T   V PVD    S+ L+  I K
Sbjct:  469 YQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC +  CNKKV D     + CE C K       R I+ A + D     WI+ F E AE I+G +A  L ELK +  ++ +Y    +   +  +  R  V  + YN+E R + T   V PVD    S+ L+  I K
Sbjct:  469 YQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC T  CNKKV D     Y CE C         R I+   + D     W++ F E AE I+G +A  L ELK +  ++ +++   +   +   + RV V  + YN+E R + TV  V PVD+    + L+  I +
Sbjct:  478 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.676e-13
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC T  CNKKV D     Y CE C         R I+   + D     W++ F E AE I+G +A  L ELK +  ++ +++   +   +   + RV V  + YN+E R + TV  V PVD+    + L+  I +
Sbjct:  478 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC +  CNKKV D     Y CE C +       R +++  + D     W++ F E AE I+G SA  L ELK +  ++ +++   +   +  +  ++ V  + YN+E R + T   V PV++   SK L+  I +
Sbjct:  475 YQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 42/137 (30.66%), Postives = 67/137 (48.91%), Query Frame = 1
Query:    4 YRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 408
            Y+AC  K CNKKV D     + CE C K   +   R ++ A + D     W++ F + AE ++G ++  L +LK    ++ ++    +   +   + R  V  + YN+E R +VTV    PVD    SK L+  I K
Sbjct:  463 YQACPSKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDT--NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597          
BLAST of CX675064 vs. ExPASy Swiss-Prot
Match: RFA1_CAEEL (Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    4 YRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD 366
            YR C +  C KK+    G  Y CE C KN  +    Y+M   + D +G+ +++ F + A +I+G SA EL EL  +  D+  Y    + + +VP + R+      YN E RQ++TV  V  V+
Sbjct:  515 YRGCASEGCQKKLVGENGD-YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYGVDDVN 634          
The following BLAST results are available for this feature:
BLAST of CX675064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RFA1_SCHPO1.371e-1534.81Replication factor A protein 1 OS=Schizosaccharomy... [more]
RFA1_YEAST1.516e-1428.47Replication factor A protein 1 OS=Saccharomyces ce... [more]
RFA1_MOUSE3.378e-1432.37Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENTR4.411e-1433.58Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_XENLA1.676e-1333.58Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_PONAB1.676e-1332.12Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_HUMAN1.676e-1332.12Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_CHICK1.419e-1229.93Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_DANRE4.129e-1230.66Replication protein A 70 kDa DNA-binding subunit O... [more]
RFA1_CAEEL7.043e-1233.33Probable replication factor A 73 kDa subunit OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59E08-I15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675064 ID=CX675064; Name=CX675064; organism=Citrus sinensis; type=EST; length=585bp
TGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTGACAGATGCCCTGGG
ATCTGGGTATTGGTGTGAAGGGTGCCAAAAAAATGATGAAGAATGTAGTT
TAAGATACATAATGGTTGCAAGGGTCTGTGATGGAAGTGGCGAAGCTTGG
ATTTCTATATTCAATGAGGAAGCAGAAAGGATCATTGGATGCTCTGCTGA
TGAGCTTAATGAATTGAAGTCACAGTTAGGAGATGATAATTCATATCAAA
TGAAATTGAAAGAAGTTACTTGGGTTCCTCATCTCCTCCGAGTTAGTGTT
GCTCAACAAGAGTACAACAATGAGAAGAGACAAAGGGTAACCGTCAGGGC
TGTTGCTCCAGTTGACTTTGCTGCTGAATCCAAATTTTTGCTGGAAGAGA
TATCGAAGAAAGTTTCTCATCAGAATGCCTAAAGCTATCTTTTTTCTATA
AAAGATACTGGGTTGACATTTTGTTTATATTATGGATTGAAATCTAGTTG
GGTAATGACTGTTAGTCACAATATTGCTTGTATTTATCTTCAGGCAATCA
AGAATGTGTTGTTTTGGTCGCTCTTAATGTAGTTC
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