CX675045

Overview
NameCX675045
Unique NameCX675045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3395 contig Csv1_Contig3395:10..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.423e-37
Identity = 83/146 (56.85%), Postives = 105/146 (71.92%), Query Frame = -2
Query:   98 MAEEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 535
            MAEE A+  L ++ E VLKKRK+ + LA  RK QLELG  G     KK KV DIKRPE F+ ++R +E+D+IRMKQR KR K      KS L+FIIRIQG +DMHPKTK+IL NL+L+ +F+GVF +A D + + L KV+PYVTYG
Sbjct:    1 MAEEEAKG-LDYIPEIVLKKRKNRDELAFIRKKQLELGNSG----KKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYG 141          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25
Identity = 63/134 (47.01%), Postives = 90/134 (67.16%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V E+VLKKRK  E  AL +K  +E  K    +KN +++    KR EQ+ K+Y ++E +LI +K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG
Sbjct:    8 VPESVLKKRKREEEWALEKKQNVEAAK----KKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYG 137          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V E+VLKKRK  E  AL +K +LE  K  + +K K        R +Q+ K+Y+++E +LI++K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG
Sbjct:   10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLI----FNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYG 139          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V E+VLKK K  E  AL +K +    K    +K+ +++    KR EQ+ K+Y +++ +LIR+K+  K        P++KLLFIIRI+G + + PKTKKIL  LRLR+IF+GVF++ N   + +L++VEPYVTYG
Sbjct:    8 VPESVLKKIKRQEEWALAKKDEAVAAK----KKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYG 137          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 61/147 (41.50%), Postives = 84/147 (57.14%), Query Frame = -2
Query:   98 MAEEA-AQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 535
            MAE+A   Q      E +LKKRK  E    TRK ++E       +  KK++ E  KR E FI  YR +E + IR+ +  K    +    ++KLLF+IRI G  +M PK +K+L  LRL RI + VFVR N  + ++L+ VEPYV YG
Sbjct:    1 MAEDAPVVQQTMLEPEVLLKKRKVNER---TRKERVEQA-IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYG 143          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V ET+LKKRKS E     R+A++E  K      NK+ +    KR E ++K+YRD E + IR+++  K+        ++KL+F+IRI+G + + PK +KIL  LRL +I +GVFVR      E+++ VEP+V YG
Sbjct:   13 VPETLLKKRKSQEKARAERQAEIEKKKAA----NKEKRAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYG 142          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 52/134 (38.81%), Postives = 83/134 (61.94%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V ETVLK+RK   A A T+ AQ    K     KNK+ K +  KR E+++++YR+ + + +R+K+  +         + K+ F++RI+G + +HPK +K L  LRLR+I +GVFV+ N   L +L+ +EPYV +G
Sbjct:   10 VPETVLKRRKQ-RADARTKAAQ---HKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWG 139          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V ET+LKKRK+ + +   ++A     K  + +K+K        R E+++K+YR+ E + IR+++  K +       + KL+F+IRI+G S M PK +K+L  LRL +I +GVFVR      E+L+ VEPY+ +G
Sbjct:   14 VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVI----FSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFG 143          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18
Identity = 48/136 (35.29%), Postives = 82/136 (60.29%), Query Frame = -2
Query:   98 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDI--KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 499
            V E++LKKR      A ++K  +++ K G  Q+ + S++  +  KR E+++ +Y   E + IR+ +  K S      P +K+ F+IRI+G + + PK +K+L  LRL ++ +GVFV+ N   + +L+ VEPYV YG
Sbjct:   12 VPESILKKR------ATSQKKAVDVAKLGRAQQLRNSRLNSVYFKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYG 141          
BLAST of CX675045 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = -2
Query:   98 FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYG 502
            F  E++LKK+K+ E     R A     K    Q+ K+  +   KR E +  +YR  E + I + ++ +         ++KL+F+IRI+G +++ PK +KI+  LRL +I +GVFV+ N    E+LQ VEPYVTYG
Sbjct:   15 FAPESLLKKKKTQEQSREQRVAAAAEKKAA--QQKKRELIA--KRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145          
The following BLAST results are available for this feature:
BLAST of CX675045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL71_ARATH2.423e-3756.8560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL72_ARATH1.247e-2547.0160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.629e-2546.2760S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.991e-2344.7860S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7A_SCHPO3.515e-2041.5060S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL7_NEUCR4.590e-2041.0460S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_CAEEL8.657e-1938.8160S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_YARLI1.477e-1837.3160S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_DICDI9.572e-1835.2960S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7C_SCHPO2.607e-1537.0460S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59D06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59D06-G11-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675045 ID=CX675045; Name=CX675045; organism=Citrus sinensis; type=EST; length=620bp
TTTTGCCAGTCATGCAATCTTTGATCATGCACCATTCATTTATTAGGCTA
ACAACAAGATCATATAACACTGAAACAAAAAGGTAAGGTCTGTCTTACCC
ATATGTGACATATGGCTCCACCTTTTGCAGCACTTCTAACATACCATCAT
TAGCCCTGACAAAGACACCACTGAAAATTCTCCTCAATCTAAGGTTGTAG
AGAATCTTCTTAGTCTTAGGGTGCATATCACTTGTGCCTTGTATGCGTAT
AATAAAAAGCAACTTAGATTTTGGCTTCCCGATCACTTTTTTCGACCTTT
TCCCTCTTTGTTTCATTCGGATAAGGTCCAATTCCTGGTCCCTATACTGT
TTGATAAATTGCTCGGGTCTTTTGATATCCTCAACTTTGCTCTTCTTGTT
CTTCTGTCCATGGCCATACTTTCCCAATTCCAACTGGGCTTTCCTCGTCA
GCGCCAAAGCCTCGGTGCTTTTTCTTTTCTTCAGCACCGTTTCCGCCACA
AAAGCTAACGGTTGCTGTGCCGCTTCTTCCGCCATATCGCTTGCAGAGAA
AAGAAAGAATAGAAGAAGAGAAGAGAGAAGGATTTGTATGAGAAAATGCA
ACTCAAGTGAAGGGAAACCT
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