EL492570

Overview
NameEL492570
Unique NameEL492570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:400..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG 271
            SQRNL+GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG
Sbjct:  111 SQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYG 195          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG 271
            SQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG
Sbjct:  109 SQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYG 193          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.137e-26
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 229
            SQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:  109 SQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.531e-24
Identity = 56/82 (68.29%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 259
            +QRNLLGE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+
Sbjct:  111 TQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEE 191          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.612e-24
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 259
            +QRNLLGE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED
Sbjct:  111 TQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQED 191          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.296e-23
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYG 271
            SQRNLLGE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG
Sbjct:  107 SQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYG 194          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.937e-19
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2
Query:   17 QRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 208
            QRNLLGE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +L
Sbjct:  109 QRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKL 172          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.315e-19
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY 268
            +QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY
Sbjct:  110 TQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGY 194          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.653e-18
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 2
Query:   17 QRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 208
            QRNLLGE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L
Sbjct:  109 QRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKL 172          
BLAST of EL492570 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.139e-18
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = 2
Query:   14 SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL 241
            +QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+
Sbjct:  110 TQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQV 185          
The following BLAST results are available for this feature:
BLAST of EL492570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MTF1_PEA1.581e-2975.58MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_PETHY1.748e-2876.74Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL9_SOLLC2.137e-2683.33Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP3_ARATH1.531e-2468.29Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL2.612e-2468.29Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE1.296e-2367.05Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP1_ARATH1.937e-1971.88Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS8_ORYSJ4.315e-1957.65MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP2_ARATH3.653e-1868.75Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS7_ORYSJ8.139e-1857.89MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC3532 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3532, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492570 ID=EL492570; Name=EL492570; organism=Citrus sinensis; type=EST; length=287bp
GACTGCGTAGTGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTC
TAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTG
AAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGA
ACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAAAC
AAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCCTAGT
GCAGAAGATTGTGGTTATGGGCTTACTCAGGACTCAT
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