CX675042 | Citrus Genome Database

Overview


Name	CX675042
Unique Name	CX675042
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	493

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2673	contig	Csv1_Contig2673:844..1335.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of CX675042 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.925e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    3 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:   77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 3

Query:   15 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 221
            D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

The following BLAST results are available for this feature:

BLAST of CX675042 vs. ExPASy Swiss-Prot

BLAST of CX675042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279


Match Name	E-value	Identity	Description
CALM_SPIOL	3.925e-35	100.00	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	3.925e-35	100.00	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_MALDO	3.925e-35	100.00	Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2	[more]
CALM_MAIZE	3.925e-35	100.00	Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2	[more]
CALM_LILLO	3.925e-35	100.00	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	3.925e-35	100.00	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	3.925e-35	100.00	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_EUPCH	3.925e-35	100.00	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	3.925e-35	100.00	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	3.925e-35	100.00	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_59D03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59D03-G5-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675042 ID=CX675042; Name=CX675042; organism=Citrus sinensis; type=EST; length=493bp
AGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTT
TTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGT
GATGACAAACCTAGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGA
TAAGGGAAGCTGATGTTGATGGTGATGGCCAGATAAATTATGAGGAATTT
GTCAAGGTTATGATGGCCAAGTAATGACCCCAACCCACCAATACTTATAA
AATGGGTTGACTAAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATT
TTTAATTTGATAGTCATGAGGGTCAGGCTAAAGGAAGCAATGGTCTTTTA
ATGGTGATGGGCCTGATGGTGTAGGAAGAATGTTGTCTCCCTCGTCAATA
TGTCTTGTGACTCGAAAAACTTTTCGGTTTTTATTATTTTAGTTGTTCTG
CTGTTCTATGAATGTTGTTGTCTGTTTAAAAAAAAAAAAAAAA