CX675041 | Citrus Genome Database

Overview


Name	CX675041
Unique Name	CX675041
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	497

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2673	contig	Csv1_Contig2673:841..1336.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_MAIZE (Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CX675041 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.019e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = -3

Query:  274 EMKDTDSEEELKEAFRVFDKDQNGFISAVELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVLMAK 495
            +MKDTDSEEELKEAFRVFDKDQNGFISA ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV+MAK
Sbjct:   76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

The following BLAST results are available for this feature:

BLAST of CX675041 vs. ExPASy Swiss-Prot

BLAST of CX675041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264


Match Name	E-value	Identity	Description
CALM_SPIOL	2.019e-34	95.95	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	2.019e-34	95.95	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_MALDO	2.019e-34	95.95	Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2	[more]
CALM_MAIZE	2.019e-34	95.95	Calmodulin OS=Zea mays GN=CALM1 PE=2 SV=2	[more]
CALM_LILLO	2.019e-34	95.95	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	2.019e-34	95.95	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	2.019e-34	95.95	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_EUPCH	2.019e-34	95.95	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	2.019e-34	95.95	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	2.019e-34	95.95	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_59D03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59D03-G5-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675041 ID=CX675041; Name=CX675041; organism=Citrus sinensis; type=EST; length=497bp
TTTTTTTTTTTTTTTTTAAACAGACAACAACATTCATAGAACAGCAGAAC
AACTAAAATAATAAAAACCGAAAAGTTTTTCGAGTCACAAGACATATTGA
CGAGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAG
ACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGT
AAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAA
GTATTGGTGGGTTGGGGTCATTACTTGGCCATCAGAACCTTGACAAATTC
CTCATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCT
CATCAACTTCTTCATCAGTAAGTTTCTCTCCGAGGTTTGTCATCACATGG
CGCAACTCAACAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCG
GAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTCCT