CX675040

Overview
NameCX675040
Unique NameCX675040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675040_ssr267 microsatellite CX675040_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:1263..1734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675040 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.498e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = -2 
Query:  355 DAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 471
            DAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  285 DAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323
The following BLAST results are available for this feature:
BLAST of CX675040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ODPB_STAPU2.498e-1284.62Pyruvate dehydrogenase E1 component subunit beta O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59D02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59D02-G3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675040 ID=CX675040; Name=CX675040; organism=Citrus sinensis; type=EST; length=472bp
TTTTTTTTTAGGGAATCTAGAAAACACTGTAAGCTCTCAAATATTAATAA
CAGATAGCACGCTAGCATTCCACCAACATGATAGGTTTCATGGGTTTATC
TCACTCCGATCACCATTCACCAGCATTGGGGTAGAGATGGTAAATCCAGG
CCTACCGATAATTAATGCAAAAACAAAAACTCGCTATCACAGTGAACGAA
AACAAGAACAAACTTGATTTCATGAACAGTTGCACGTTTTTATCGCACAA
AATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAAGCTGCTGAGAA
CTAACACTGCATAGATAGATTCGGTTATGACACTTCGGTATTCAAAAACT
ATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAGGTTGAACCACA
GTCCATTCCTCCAATGTGCCGGCATATGGAGTTGGCACGTCCTGTGATGA
TAAGCATACAATAGGAGCATCC
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