EL492569

Overview
NameEL492569
Unique NameEL492569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EL492569_ssr137 microsatellite EL492569_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EL492569 vs. ExPASy Swiss-Prot
Match: TAF1A_ARATH (Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 48/158 (30.38%), Postives = 71/158 (44.94%), Query Frame = 1 
Query:   22 LTNDSAKRKVRDERNWWEEEEKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIRXXXXXXXXXXXXXXXXXX--IGDDYLEDYRAKRNDRRMLERDRGAKRKPGAELGKHSADYGPPTKRRRGGKVGLSNILXRIVETLRENTELSYLYL 489
            L+ +S +R+ +++R WWEEEE                                      S R                    I + YLEDY  ++NDRR+ ER R  + +  ++  +  A+Y P  KRR+ G+VGL+NIL RIV+TLR   E+S L+L
Sbjct: 1668 LSENSLERRPKEDRVWWEEEEISTGRHREVRARRDYDDMSVSEEPNEIAEIRRYEEVIRSEREEEERQKAKKKKKKKKLQPEIVEGYLEDYPPRKNDRRLSERGRNVRSRYVSDFERDGAEYAPQPKRRKKGEVGLANILERIVDTLRLKEEVSRLFL 1825
The following BLAST results are available for this feature:
BLAST of EL492569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TAF1A_ARATH4.530e-1330.38Transcription initiation factor TFIID subunit 1-A ... [more]
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Properties
Property NameValue
Genbank descriptionC3531 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3531, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492569 ID=EL492569; Name=EL492569; organism=Citrus sinensis; type=EST; length=502bp
GACTGCGTAGTGATCCCTTTATTGACTAATGATTCAGCAAAAAGGAAAGT
GAGAGATGAGAGGAATTGGTGGGAAGAGGAAGAGAAGGGAAGAAATGCTG
AGAGGATCAAAGAAGAAAGGGCAAGGAGGATTTATGAGGAAGGAAGGAGG
TTTGTGGAAGAGCGGGAAAGGTTTGCTGAACTTAGGAGGTATGAAGAATC
CATCAGAAAAGCGAGAGAGGAAGAACTCCTCCAAAAAGCAAAGAAGAAGA
AAAAACCTGAAATAGGAGATGATTATTTAGAGGACTACAGGGCTAAAAGA
AATGATAGAAGGATGCTAGAAAGAGATCGAGGTGCAAAGAGGAAACCTGG
CGCAGAGTTGGGAAAGCACAGTGCAGATTATGGACCTCCGACAAAGCGAC
GCAGAGGGGGAAAGGTTGGTCTGTCAAACATATTANAGCGCATTGTAGAG
ACCCTCCGAGAAAATACTGAGTTGTCATATCTCTACCTTACTCAGGACTC
AT
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