EL492568

Overview
NameEL492568
Unique NameEL492568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EL492568_ssr327 microsatellite EL492568_ssr327:327..344. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6915 contig Csv1_Contig6915:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_ARATH (Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.795e-47
Identity = 90/108 (83.33%), Postives = 102/108 (94.44%), Query Frame = 3
Query:    3 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 326
            CL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA+ LL+ NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q
Sbjct:   77 CLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQ 184          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_PONAB (Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.788e-24
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 314
            L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   85 LEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_MOUSE (Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.788e-24
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 314
            L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   84 LEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 186          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_HUMAN (Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 6.212e-24
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 314
            L+I+  +Q KKE   ++   F +++ ++ +A +  TD +CLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   85 LEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_BOVIN (Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.060e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 314
            L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:   85 LEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_DICDI (Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.442e-20
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 317
            LDIV  ++ K    E+ +  +E+SEG++S A++ +  S+ LWLGANVMLEYS +EA  +L+KN +     L   I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct:   81 LDIVDHVENKSN--ESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_SCHPO (Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe GN=SPAC3H8.07c PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 3
Query:    9 DIVATLQA----KKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 317
            DI  TLQ+    K+  G++ T  +E+++ + ++A +E  D+V LWLGANVMLEY+ +EA  LL + L +A+ +L+    DL+FLR QVT  +V  ARVYN+ V  R+
Sbjct:   59 DIRKTLQSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_DROME (Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 317
            L++V  L+ + E  E     F +S+ +F +  +  T +V LWLGA+VMLEY  DEA  LL +N+ +A  +L+ +  D  FLRDQ+T T+V +ARVYNW V +R+
Sbjct:   74 LEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_CAEEL (Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.090e-15
Identity = 36/104 (34.62%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    6 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 317
            L I+ TL AK+   E+    F +S+ ++++A ++  + V +WLGANVM+EY  + A  LL KN  + +  ++ L  +L +++DQ+T T+V ++ + N+ V++RR
Sbjct:   72 LSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKLLDKNRGSVQKVVDELTNELSYIKDQITTTEVNMSHIVNFGVNKRR 175          
BLAST of EL492568 vs. ExPASy Swiss-Prot
Match: PFD3_YEAST (Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN=PAC10 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15
Identity = 38/98 (38.78%), Postives = 65/98 (66.33%), Query Frame = 3
Query:   39 EGGEALTADFEVSEGIFSRARIEDTDS-----VCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 317
            E  E +   +++++ ++++A+++  +      V LWLGA+VMLEY  DEA  LL+K L +++ SL V   D++FLR+ +T  +V  AR+YNWDV +R+
Sbjct:   88 ESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLEYPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQ 185          
The following BLAST results are available for this feature:
BLAST of EL492568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD3_ARATH1.795e-4783.33Probable prefoldin subunit 3 OS=Arabidopsis thalia... [more]
PFD3_PONAB2.788e-2451.46Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 S... [more]
PFD3_MOUSE2.788e-2451.46Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 S... [more]
PFD3_HUMAN6.212e-2450.49Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 S... [more]
PFD3_BOVIN1.060e-2352.43Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=... [more]
PFD3_DICDI5.442e-2046.15Probable prefoldin subunit 3 OS=Dictyostelium disc... [more]
PFD3_SCHPO1.936e-1743.93Probable prefoldin subunit 3 OS=Schizosaccharomyce... [more]
PFD3_DROME1.639e-1643.27Probable prefoldin subunit 3 OS=Drosophila melanog... [more]
PFD3_CAEEL3.090e-1534.62Probable prefoldin subunit 3 OS=Caenorhabditis ele... [more]
PFD3_YEAST8.991e-1538.78Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN... [more]
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Properties
Property NameValue
Genbank descriptionC3520 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC3520, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492568 ID=EL492568; Name=EL492568; organism=Citrus sinensis; type=EST; length=472bp
AGTGTTTAGATATTGTTGCTACTTTACAAGCTAAGAAGGAAGGGGGGGAG
GCACTTACTGCTGATTTTGAAGTCTCTGAAGGCATATTTTCGCGGGCTCG
CATTGAGGATACAGATTCAGTGTGTTTATGGCTGGGAGCAAATGTCATGT
TAGAGTATTCATGTGACGAGGCTACTGTTCTTTTGCAGAAGAATTTAGAG
AATGCTAAAGCAAGTTTAGAAGTACTTATTGCCGATTTGCAATTCTTGAG
GGATCAAGTTACTATAACTCAGGTTACCGTTGCTCGTGTTTATAATTGGG
ATGTTCATCAGCGGAGAATTCGACAGGCTGCTGCTGCTGCTGCTAATGAG
TCATGAAATGAACCTTATCTTATAATTTCACTTGGATGCAGAGGTGGGGC
AGAATATGCACCTAACCTCTCTTGTTTCTTCGTTTACGCCAATGGATTGT
CCTTGTATTATCCCGTGACTTA
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