CX675030

Overview
NameCX675030
Unique NameCX675030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7627 contig Csv1_Contig7627:344..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675030 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.593e-72
Identity = 131/156 (83.97%), Postives = 145/156 (92.95%), Query Frame = -1 
Query:  118 QLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATWKIIVEP 585
            QLAKL N HVTA+CGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLLLIPK ENL+F+V LVKEGK+KTVI+SKHPLSKAEDAWA+SIDGHAT KIIVEP
Sbjct:  174 QLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329
[Close]
BLAST of CX675030 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.025e-66
Identity = 120/156 (76.92%), Postives = 138/156 (88.46%), Query Frame = -1 
Query:  118 QLAKLGNTHVTASCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCATGIPWSTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRENLDFLVKLVKEGKLKTVINSKHPLSKAEDAWAESIDGHATWKIIVEP 585
            QLAKLGNTHVTA+CGARN++FVK LGADEVLDYKTP+GA+L SPSG+KYD V+H A+GIPWSTFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLLLIPK  N +++V LVKE KLKTVI+SKHPLSK EDAW+  + GHAT KII+EP
Sbjct:  174 QLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329
The following BLAST results are available for this feature:
BLAST of CX675030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH3.593e-7283.97Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL5.025e-6676.92Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_59C06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59C06-E11-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675030 ID=CX675030; Name=CX675030; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTGGTTGAAAGTAATTACACGATGAAACAGCACATTTGCCATAAG
CTTTGTCCTACAGACAAATTCTTCAGTGACATAAAACTTCAACAATAAAC
CAAATCATATGAAGTTATGGCTCCACAATGATCTTCCATGTAGCATGGCC
ATCAATACTCTCAGCCCAAGCATCTTCTGCCTTGCTCAGGGGATGCTTTG
AGTTGATTACTGTCTTAAGCTTTCCTTCCTTCACCAACTTAACTAGAAAA
TCTAGGTTCTCACGCTTGGGAATCAGCAGCAGTGGTACCAGCTGCTTTTT
GGAGAAGGTAAGTTTCTTCAAAGCAAAAGTCAGCATCGCACTAGGGCCAG
GAGTGATATCTATCACCTTCCCATTTGTGCCCAGATTAGGCTCAAAAGTA
GACCAGGGAATCCCTGTTGCACAGTGGATCACTGCATCGTATTTTCGACC
AGATGGACTCTTTAGAGCTGCCCCGTCAGGTGTCTTGTAATCAAGAACCT
CATCAGCCCCTAAACTCTTGACAAATTCAATGTTGCGAGCCCCACAAGAG
GCAGTCACGTGCGTGTTTCCAAGCTTCGCCAACTGCCT
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