CX675023

Overview
NameCX675023
Unique NameCX675023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675023_ssr89 microsatellite CX675023_ssr89:89..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = -2
Query:  497 STEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 739
            STEDA++FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+VGDDPAALPKGQTIN+G KDDVSAVKK GCCS+
Sbjct:  138 STEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 736
            T++ ++FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++ GDD  + P KG+ INI  KDDVSAVKK GCCS
Sbjct:  139 TDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCS 216          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD--DPAALP-KGQTINIGTKDDVSAVKKTGCCS 736
            TED +SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++ GD    + LP KGQTIN+  K+D S +K+ GCCS
Sbjct:  138 TEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV--KEDSSVLKRFGCCS 217          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = -2
Query:  497 STEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALPKGQTINIGTKDDVSAVKKTGCCSA 739
            ST++A+  AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++ GD+ A   A PKG+TINI  KD+ S+ KK GCCS+
Sbjct:  137 STDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 736
            TEDA+SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++   + A +P KG  I+IG   DVSAVKK GCCS
Sbjct:  138 TEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 47/80 (58.75%), Postives = 68/80 (85.00%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 736
            TE+A++FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D G + A LP KG+TIN+  K+D S +K+ GCCS
Sbjct:  138 TEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 48/80 (60.00%), Postives = 65/80 (81.25%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-PAALPKGQTINIGTKDDVSAVKKTGCCS 736
            TED +S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++ G+D  A++PKG+ I +  K+DVSA+KK GCCS
Sbjct:  138 TEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = -2
Query:  500 STEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAAL---PKGQTINIGTKDDVSAVKKTGCCS 739
            STED ++FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++ GD P+      +GQTIN+   +D S + +  CCS
Sbjct:  137 STEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINV--NEDSSVLNRYRCCS 217          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = -2
Query:  503 STEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIG-TKDDVSAVKKTGCC 739
            STE+AQ+FA + N  F+ETSA+++ NVE AF  VLT+I+R+VS ++L+ GDD      GQT+NI  T +D++  K +  C
Sbjct:  134 STEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQC 213          
BLAST of CX675023 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  500 TEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-----PAALPKGQTINIGTKDDVSAVKKTGCCS 736
            TEDA+ FAE+EN FFMETSALES NVENAF  VLT+IYR+VS+K L   ++      ++L KG  I +  ++     K + C S
Sbjct:  143 TEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226          
The following BLAST results are available for this feature:
BLAST of CX675023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RB11B_TOBAC5.042e-3386.42Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ1.165e-2165.00Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11D_LOTJA9.862e-2163.41Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
YPT3_NICPL1.288e-2061.90Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RAA1C_ARATH2.869e-2065.00Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.424e-1958.75Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAA1B_ARATH2.429e-1960.00Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11E_LOTJA1.575e-1856.63Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPT3_SCHPO3.397e-1347.50GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RGP1_ORYSJ3.397e-1350.00Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B12-C23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675023 ID=CX675023; Name=CX675023; organism=Citrus sinensis; type=EST; length=740bp
TTTTTTTTTTTTTTTTTCAAAGAAAAGATTGATGATTTCCTAGTTGGGTT
GCAAATGAATGATGTGAATATAAATTTCAGTACAAAATAATCAATCAATC
AATCAAGTTTAAGAACAGAATTATCTTAACATACTTCCCAAATTCCAGTC
CTCAAAAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATAC
TACAATATTTTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACA
GTAGGCTCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTT
AACCTAACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAA
AACTATAATTTCTTCCCGCACTCCATGTTGTCTCGTCCTGGCAAGCAGAT
CAAAGCCAAGATGTCTCCGAGCCATGGAAATGTAAGTTCTAGAAAGAGGA
GAAACTATTTTTTAGCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCA
GAGCAGCACCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAAT
ATTAATAGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAA
GAGCCTTCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAG
GCATTTTCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGT
GTTCTCTTTCTCAGCGAACGACTGAGCATCCTCAGTTGAA
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