FC871921

Overview
NameFC871921
Unique NameFC871921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:317..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 2.642e-105
Identity = 190/216 (87.96%), Postives = 193/216 (89.35%), Query Frame = 3
Query:    3 NMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            NMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQA IHGLNRHYYSIAINYR                WTDGLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV+F
Sbjct:   93 NMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 4.237e-87
Identity = 159/215 (73.95%), Postives = 173/215 (80.47%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQA IHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F
Sbjct:   95 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.237e-87
Identity = 159/215 (73.95%), Postives = 173/215 (80.47%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQA IHGLNRHYYSI INYR                W +GLTL  +  H K NE  V+EML LA  YNKAV+EED++ PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLDTV+F
Sbjct:   95 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.363e-85
Identity = 152/215 (70.70%), Postives = 175/215 (81.40%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLINP  ++LGQEPRQTTSNLGHL KPS+QA IHGLNRHYYSI+INYR                W DGLTL  ++ H   NE TV EML+LA  YNK++++E+++ PE+LAI NVG+QD K+HLEE V  +M +NIVQ LG MLDT++F
Sbjct:   93 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLDTIVF 307          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 2.042e-73
Identity = 135/216 (62.50%), Postives = 157/216 (72.69%), Query Frame = 3
Query:    3 NMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            NM+DMLKQTGRPEMVVGWYHSHPGFGCWLS VDINTQQSFE L  RAVAVVVDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQA IHGL RHYYS+ INY+                W  GL L  F+  ++ N  ++ +M +L+ +Y + VQ E  L PE+L I  VG+QD KKHL+  V   + +NI   L  MLD+V F
Sbjct:   93 NMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLDSVAF 308          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.323e-72
Identity = 133/212 (62.74%), Postives = 159/212 (75.00%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDT 641
            MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVVVDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQA IHGLNRHYYSI I YR                W D +++  +    + N++ ++ ML LA  Y KA+++E  +  ++LAI NVG+ D K+H+ + VS +++ NIVQ+L  M+ T
Sbjct:   97 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMMAT 308          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.583e-68
Identity = 126/215 (58.60%), Postives = 154/215 (71.63%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 650
            MLDMLKQTGR E+V+GWYHSHPGFGCWLS VD+NTQQSFE L  RAVAVVVDP+QSV+GKVVIDAFR I         EPRQ TSNLGHL  PSIQA IHGLNR+YYSIAINYR                WT+GL + +FD H ++NE+ +  +L L  +Y K++Q+ED++ PEK  ++ VG+ D K+HL   V  LM++N+V+ L  MLDTV F
Sbjct:   95 MLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSPT---AEPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQINNLLELTKQYQKSIQDEDKIEPEKKEVSAVGKLDPKRHLISDVHTLMANNVVRVLTVMLDTVTF 306          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.267e-63
Identity = 117/213 (54.93%), Postives = 149/213 (69.95%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 644
            M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD++TQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+P T++  QEPRQTTSN+G LNKP+IQ+ IHGLNRHYYS+ I+Y                 W  GL +H +    + N +  ++ + +A +Y K ++EE EL  ++L    VG+QD KKHL E    ++  NIV  L   +++V
Sbjct:   96 MMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHLSETAERVLEENIVSVLTAGVNSV 308          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.058e-61
Identity = 117/213 (54.93%), Postives = 146/213 (68.54%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 644
            M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++   EPRQTTSN G LNK +IQA IHGLNRHYYS+ I+Y                 W  GL ++ ++   ++N    + M+ +A +Y+K ++EE EL  E+L    VGRQD KKHL E     + +NIV  L   +++V
Sbjct:   91 MMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSV 303          
BLAST of FC871921 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.837e-60
Identity = 114/213 (53.52%), Postives = 143/213 (67.14%), Query Frame = 3
Query:    6 MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAFIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTV 644
            M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++  QEPRQTTSN G +NK +IQA IHGLNRHYYS+ I+Y                 W  GL +  +      N +  + M+ +A +Y+K ++EE EL  E+L    VG+QD KKHL +   N +  N V  L   ++++
Sbjct:   91 MMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKMQDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAENTLEENTVSVLTAGVNSI 303          
The following BLAST results are available for this feature:
BLAST of FC871921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSDE_ARATH2.642e-10587.9626S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE4.237e-8773.9526S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN4.237e-8773.9526S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME1.363e-8570.7026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO2.042e-7362.5026S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL1.323e-7262.7426S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DICDI2.583e-6858.6026S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO3.267e-6354.9326S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_YEAST3.058e-6154.9326S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA9.837e-6053.5226S proteasome regulatory subunit RPN11 OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3CF11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871921 ID=FC871921; Name=FC871921; organism=Citrus sinensis; type=EST; length=821bp
CTAACATGCTTGACATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTT
GGATGGTATCACTCACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGA
CATAAACACACAGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTG
TGGTTGTGGATCCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCC
TTCCGCTTGATTAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCA
GACAACTTCCAATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTTA
TCCATGGCTTGAATAGACATTATTATTCTATTGCCATCAATTACAGGAAG
AATGAACTTGAAGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGAC
TGATGGATTAACACTTCATCGCTTTGATTGTCATTCCAAAACCAATGAAC
AGACTGTCCAGGAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTT
CAAGAAGAAGACGAGCTGCCGCCAGAGAAGCTGGCCATTGCTAATGTGGG
AAGGCAAGATGCAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGT
CCTCAAACATAGTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTC
TAGATGTTGGTTTGTTTTCTGTAGTTTCACTAGCTTCACTCTTGTTTGAC
TATTTGTATGGCATTTACAGTTTGAATTTGTGCTTTATAATTTAACATTT
TAATTCTGAAGGCCTATCCTTTTGTCATGGATGTGCTGGTTTGTNGCTGA
ACGTAGTATATGATTGTGGCT
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