DY306161

Overview
NameDY306161
Unique NameDY306161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 1
Query:  286 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDGGVI 618
            LS REQDRFLPIANVSRIMKKALPANAKISKDAKET+QECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQ++ E EGE+T +G    GG +
Sbjct:   23 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEV 133          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.871e-48
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTS 588
            S REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQKY E EGEKT+
Sbjct:   18 STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDGGV 615
            S REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKY E EG+       +DG +
Sbjct:   28 SVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSI 136          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.618e-45
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 1
Query:  295 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDGGV 615
            REQDRFLPIAN+SRIMKKA+PAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKY E EG+        DG V
Sbjct:   37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSV 143          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.089e-43
Identity = 81/107 (75.70%), Postives = 91/107 (85.05%), Query Frame = 1
Query:  289 SAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDG 609
            S REQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVSEFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK+YL +Y E EG+    G   DG
Sbjct:   18 SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDG 124          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.015e-42
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1
Query:  295 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTS 588
            +EQDRFLPIANV RIMKK LP N KISKDAKETVQECVSEFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLKVYL KY + EGEK +
Sbjct:   35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVN 132          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = 1
Query:  286 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMG 594
            L+ REQDRFLPIAN+SRIMK+ LP N KI+KDAKET+QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLKVYL +Y E EG+    G
Sbjct:   25 LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSG 127          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.526e-41
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1
Query:  286 LSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGE 579
            L  REQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYL +Y E EG+
Sbjct:   26 LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 1
Query:  295 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGEKTSMGMENDGGV 615
            REQDRFLPIAN+SRIMKKA+PAN KI+KDAKET+QECVSEFISF+T EASDKCQ+EKRKTING+DLL+AM TLGFEEYV+PLK+YL KY E  G+        DG V
Sbjct:   33 REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGSV 139          
BLAST of DY306161 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 71/95 (74.74%), Postives = 86/95 (90.53%), Query Frame = 1
Query:  295 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYTEKEGE 579
            +EQDRFLPIAN+ RIM++A+P N KI+KD+KE+VQECVSEFISFIT EASDKC +EKRKTINGDDL+W+M TLGFE+YVEPLK+YL+ Y E EG+
Sbjct:   21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115          
The following BLAST results are available for this feature:
BLAST of DY306161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
NFYB2_ARATH1.683e-4883.78Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB3_ARATH2.871e-4895.00Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB_MAIZE1.741e-4579.82Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ6.618e-4581.31Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB1_ARATH8.089e-4375.70Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB7_ARATH4.015e-4282.65Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYBA_ARATH8.944e-4276.70Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH1.526e-4181.63Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB2_ORYSJ1.687e-4074.77Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB4_ORYSJ2.977e-3774.74Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3DC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306161 ID=DY306161; Name=DY306161; organism=Citrus sinensis; type=EST; length=689bp
GTCCCTTTCCGCAAGGAGAAGAGGAAAAAAAAAAAAAAGGCCACCACCTT
CAGCCTTCAGGCTTCATCCTGCCTAGCATACCATCAACTTCCCATTTTAC
CCCTCTTGTTTTCTCATAATTCTCAATTCCCCACTCTCCTGAAAAATCCA
GTCTTTATTATCTGACAAAATCAAAATTCGATCTTTCGATCTGGGTATTT
TGAGAATTTTTTCTTTTTAAATATTGTGATGGCTGATTCGGACAACGATT
CTGGGGGGCAAAACAACAGCAACGCAAACAGCGAGCTGTCGGCGAGAGAA
CAGGATAGGTTCTTGCCGATAGCTAATGTAAGCAGGATAATGAAGAAGGC
TTTGCCAGCGAATGCGAAGATATCAAAGGACGCTAAAGAGACAGTGCAAG
AGTGTGTGTCGGAGTTTATAAGTTTCATAACTGGCGAAGCTTCTGACAAG
TGTCAGCGCGAGAAGCGGAAGACGATCAACGGTGATGATTTGTTGTGGGC
CATGACGACTTTAGGCTTCGAAGAGTACGTGGAACCCTTGAAGGTCTATT
TGCAAAAGTATACGGAGAAGGAGGGAGAGAAGACTTCCATGGGGATGGAG
AACGACGGCGGTGTTATCTGAAGCCGCCCTTAACTATTCGTGACGGGTCG
GATGCGGGGATTGTCGCCATGCTGGTGGAGGAGTCAGTG
back to top